FMO06160.5prime Sequence
1158 bp (1009 high quality bases) assembled on 2008-09-15
> FMO06160.5prime
CAGTCGACATGAATTGGGCTATCTATCTTTTGTTGGCCCTGATCTCGCTG
GGCAGAGCAACACCTGTTCCCAATCGCCAGTATAGCTGTATGAGCTACCA
GGAGGACGACAACTCATTTCACGATGATGATGGCGATCAGGACTCTAGTG
GCGAGCTGCAGGAGCAGCAGGTGGAGTCCACTCCGATTCCGAGCGAGCCA
CATAGACGCACCTGCCCAGATGGCTACACTTTCTGTTTCACCATCTGGAA
CCAGACGGCCAATGGAGCGCGGGTTGTTAAACAGGGTTGCTGGAAGGACA
ACACGGATCGCACTTCCATTTGCAGCCAGTCGGAATGTACCAGCTCGGCT
CCCACCTCGAAGACCAGTTCTTTGTACTACTGTTGCTGTTCGGGAGGAGT
GTGCAATGCCCAATATTCCGTGGTCGAACCGGCACCTCTGGAACTGGGCT
CCAATGAGGGACGGACTTCGATCACAAATCGGGCGACAGAAAAACAGCAC
CAGTCCTTTTTGGCCAGTACAATGCTGGGCCTTGCCGGTGGACTCACAGC
CCTCACAATCGGCATCTTTCTGGCTGTTCAATATTGCCGCACGGCCAAGG
AGAAGCCGGAACCGGAGGAGTCGCCTCTGGCACCATCGGGCCCTGGCTAC
AGTTCTAATCTCAGGAATGTCGACAACATGAATTTGATCGGCATGCTGGG
GAGCGGCAAGTATGGAACTGTGATGAAGGGACTGCTCCACGATCAGGAGG
TGGCGGTTAAGATATATCCCGAAGAGCATCATCAGTACTATGTGAACGAG
AGGAACATCTATGCCTTGCCTTTGATGGAGTGTCCTGCGCTGTTGAGCTA
TTTCGGCTACATGAACGCTGTACCATGGGACGGGCGAATGGAGTATCAAC
TGGTACTATCATCTGGCTCCCCTCGGATGCCTTCAGGATTGGTTGATAGC
CAATACCTAACTTTCAGCGAATGCTGTGGAATGCTGGCGGTCCATTCCGG
CGTGCAATTCTGCCACCTGACACGGTAACTCGACTGGGAGATTCACCATA
AGCCTGGGGTGGCTCATCGGGAATATAAACCAGGGAATGTGGTTGGTCAG
CTGATCTCACTGTTGCATTGGCGAACTTTGGTTTCGCTCCCAAGGTGTTG
GCCTCCAG
FMO06160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wit-RB | 4217 | CG10776-RB | 411..1560 | 6..1157 | 5120 | 97.1 | Plus |
wit-RA | 4217 | CG10776-RA | 411..1560 | 6..1157 | 5120 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4067233..4067804 | 856..285 | 2860 | 100 | Minus |
3L | 28110227 | 3L | 4067862..4068088 | 287..61 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 4066871..4067164 | 1157..861 | 525 | 85.3 | Minus |
3L | 28110227 | 3L | 4068159..4068213 | 60..6 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:57 has no hits.
FMO06160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:14 Download gff for
FMO06160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wit-RA | 409..1560 | 1..1158 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:58 Download gff for
FMO06160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wit-RA | 405..1556 | 1..1158 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:37 Download gff for
FMO06160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wit-RA | 409..1560 | 1..1158 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:37 Download gff for
FMO06160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4067234..4067803 | 286..855 | 100 | <- | Minus |
3L | 4067864..4068088 | 61..285 | 100 | <- | Minus |
3L | 4068159..4068215 | 1..60 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:14 Download gff for
FMO06160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4067234..4067803 | 286..855 | 100 | <- | Minus |
arm_3L | 4067864..4068088 | 61..285 | 100 | <- | Minus |
arm_3L | 4068159..4068215 | 1..60 | 95 | | Minus |