FMO06161.5prime Sequence
675 bp (670 high quality bases) assembled on 2008-09-15
> FMO06161.5prime
CAGTCCACATGGATCCCACCATTTCAGTGTCCAAGGGCTGTTTTGTCTAC
AAAAATGGCGCTACGAGAGCAGGGAAAAAGGCGGCCAGCAAACGGAAGCG
TCCTGCCGCAAAATCCAGTAGTCTTCTTGGCAAAGAGGTAGTGCAGCAGC
CCTTCTATGAGGAATATCGCAAGGCCTGGAATCAGATAAACGATCACATT
GCCGACCTGCAGCACCGCAGCTATGCCCGCACTCTGGAACAACTGGTGGA
CTTTGTGGTGGGGCAGGCAGAGCGCGACACCCCGGACGAGGTGCTGCCCA
CCGCCGCCTTGCTAACGGGCATTAATCACCCGGATCATCTCAGCCAGTTC
ACGGCACTTACCCAGCGACTCCATGCCCAACGTGCTGCAATGGTATGTGT
GCTGCAGTCCAGGGATTGCGCCAATCTCAAGGCGGCCGTTGAGACATTGG
TTTTCGGGCTCGTAGAAGATAATGCAGAAGTGGAGCAAATGGAAGACGAG
GACGAGGACGAGGATGGTGCCGAACGGGATCGCAAGCGGCTACGTCGCTC
GCAGTGCACCATGAAGCAGTTGAAGTCTTGGTACACAAACAATTTTGACT
CGGAACAGAAGCGCCGCCAGCTGGTCGTCATCCTTCCCGACTTTTGAGTG
CTTTAACGCAAGCGTGCTGCAGGAT
FMO06161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34315-RB | 3315 | CG34315-RB | 1022..1687 | 9..675 | 3235 | 99.1 | Plus |
| lat-RB | 2423 | CG4088-RB | 130..795 | 9..675 | 3235 | 99.1 | Plus |
| lat-RA | 3315 | CG4088-RA | 1022..1687 | 9..675 | 3235 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13204480..13205120 | 675..34 | 3085 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:29 has no hits.
FMO06161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:09 Download gff for
FMO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 988..1662 | 1..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:17 Download gff for
FMO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34315-RA | 988..1662 | 1..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:01 Download gff for
FMO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lat-RA | 1013..1687 | 1..675 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:01 Download gff for
FMO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13204480..13205118 | 36..675 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:09 Download gff for
FMO06161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9091985..9092623 | 36..675 | 99 | <- | Minus |
