FMO06162.5prime Sequence
1150 bp (977 high quality bases) assembled on 2008-09-15
> FMO06162.5prime
ATTATACGAAGTTATCAGTCGACATGCCGGCTATGGCCAAGGAGAAAGCA
TCAGCAACAGTGTCCTTGGGCGAGTCGAATTTCAGAGATATCAACCTAAA
AGACTTGGCCGTGGTCGTCGAAGCGGCATCGCGGCTGCACCACCAGCAAA
ACGTATGCGGCTGCGGAGCGGTATCGTCTACTGAGAACAACAACAACAGT
CGCTACGGCAGCAGCAAGTATCTGACAAACGGCCACACGTCGCCTTTGGC
GGCAGCGGTTGCTAGCAACAGTTCGTCGGTGGCCACGACACCGCATTGCA
GAATGTTGCACAACTGCAGTCTGCAGCAGTACCAGAATGACATAAGGCAG
CAGACGGAGATATTGGACATGTTGCGGCAGCAGCATCAGCAGGGCTACCA
GTCGCAGCAACAGCAACAACAGCCGCAGCAGCAGCAGGAACAACAGCAGC
AGCAGGAGCAATCGCAGCAGCAGCAACAGCTACAGAATCCTGCGCCCAGG
AGGTCTCCGAATGATTTCATTTTCGGTCGTTACATAGGCGAGGGCAGCTA
TAGCATAGTTTATCTGGCCGTGGATATACACTCTCGCCGCGAGTATGCAA
TTAAAGTATGCGAGAAGCGGCTGATCCTGCGCGAACGGAAGCAGGACTAC
ATCAAGCGTGAACGCGAGGTGATGCACCAGATGACCAACGTTCCCCGGCT
TCGTAAACCTGTCGTGCACCTTCCAGGACCAGCGTTCTCTTTACTTTGTG
ATGACGTACGCGCGAAAGGGCGACATGTTGCCATACATCAACCGCGTGGG
TAGCTTTGACGTGGCCTGCACGCGCCACTACGCTGCCGAGCTTCTGCTGG
CCTGCGAGCACATGCACCGCCGTAATGTGGTGCACCGCGACCTCAAGCCC
GAGAACATCCTGCTCGACGAGGAACTGCACCACGCTATCGCCGACTTCGG
TTCCGCAAAGTTGATGACAAGCCCCGAAAGGGCTCTGGCCACGGAAGCAC
TGTTCGGAGCACGGCGCAGCAACTTCGAATGAGGCGATGAAGAAAGCGAA
CGCTTGAAAATCGAAGACAAGAACTTCTACGATCGCGAATCGAAGGATTT
GACGACGCGACGAACGACGCAACGGAAAGAATGAACTCCCCCACCCCTTC
FMO06162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk1-RJ | 4959 | CG1210-RJ | 617..1707 | 24..1113 | 4950 | 97.5 | Plus |
| Pdk1-RF | 4162 | CG1210-RF | 422..1512 | 24..1113 | 4950 | 97.5 | Plus |
| Pdk1-RH | 4347 | CG1210-RH | 607..1697 | 24..1113 | 4950 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 141765..142269 | 596..1101 | 1935 | 93.5 | Plus |
| 3L | 28110227 | 3L | 135966..136339 | 231..604 | 1855 | 99.7 | Plus |
| 3L | 28110227 | 3L | 135635..135843 | 24..232 | 1045 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2686 | 132..481 | 268 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2660 | 186..491 | 190 | 56.5 | Plus |
FMO06162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:48 Download gff for
FMO06162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RH | 599..1697 | 17..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:18 Download gff for
FMO06162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk61C-RA | 867..1965 | 17..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:34 Download gff for
FMO06162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RH | 599..1697 | 17..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:34 Download gff for
FMO06162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 135627..135842 | 17..231 | 98 | -> | Plus |
| 3L | 135967..136335 | 232..600 | 100 | -> | Plus |
| 3L | 141770..142283 | 601..1113 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:48 Download gff for
FMO06162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 135627..135842 | 17..231 | 98 | -> | Plus |
| arm_3L | 135967..136335 | 232..600 | 100 | -> | Plus |
| arm_3L | 141770..142283 | 601..1113 | 94 | | Plus |
