FMO06163.5prime Sequence
1156 bp (965 high quality bases) assembled on 2008-09-15
> FMO06163.5prime
CAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCATGCTACGC
TTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATCTACGCCTC
GTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCCTGCGGCAT
CACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGCCCATGGAC
CAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCGCCACCTGG
TGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTCGCAACAAT
TACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGCACCGCCTG
CCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCGGGCGCCAG
TCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGCGGATGAGC
TGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCACAGGCAAC
ATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTGGCTGTTAA
ACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCAGTCACAGT
CGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATACCCACTTCC
AATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAGAACATCAC
TTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACTCAACGCAG
TGGACGGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGCAGGACCG
GAATCCAAGGTGATACAGGAAATTAAGGAGGCAAGAAAGAGGCGGCAGTC
CCTCTGCAAATCCGCAAAACCACCAGTGCCACCTGTGAAAACGACGAAGA
GCAAGTGCCAAGTGCTCCTGTAGATCCCTTCAGGGAGTGGCCCACCGAGA
CACTCTACGAGCAGCCACTGTGATGAGGAGATCGATGCGAACGGCATATG
TCCGAAAGGCGAAAGTTTATAAGCTTCCTGGTTCTTAATAACCTCACCGA
TGTCCTCACGATGCAGCCCGCATGTCCATCCGGCGACTTGGATGCATTAC
GGGAAAGAGAAGGGACGTGGGCCATGCATTTGTCTCTAGACATGTGCACC
CATGGA
FMO06163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 3215 | CG8668-RB | 1111..2242 | 8..1134 | 5050 | 97.4 | Plus |
CG8668-RA | 2889 | CG8668-RA | 785..1916 | 8..1134 | 5050 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8131425..8131913 | 8..496 | 2445 | 100 | Plus |
2L | 23513712 | 2L | 8132594..8133016 | 717..1134 | 1165 | 90.9 | Plus |
2L | 23513712 | 2L | 8131968..8132199 | 491..722 | 1145 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2508 | 448..612 | 145 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2419 | 481..604 | 144 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7070 | 448..675 | 141 | 55 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2486 | 487..614 | 135 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2478 | 486..527 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2826 | 487..527 | 115 | 75.6 | Plus |
FMO06163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:42 Download gff for
FMO06163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 775..1926 | 1..1144 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:20 Download gff for
FMO06163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 752..1903 | 1..1144 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:01 Download gff for
FMO06163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 775..1926 | 1..1144 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:01 Download gff for
FMO06163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8131415..8131912 | 1..495 | 99 | -> | Plus |
2L | 8131973..8132194 | 496..717 | 100 | -> | Plus |
2L | 8132595..8133026 | 718..1144 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:42 Download gff for
FMO06163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8131415..8131912 | 1..495 | 99 | -> | Plus |
arm_2L | 8131973..8132194 | 496..717 | 100 | -> | Plus |
arm_2L | 8132595..8133026 | 718..1144 | 92 | | Plus |