Clone FMO06163 Report

Search the DGRC for FMO06163

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:61
Well:63
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8668-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06163.5prime Sequence

1156 bp (965 high quality bases) assembled on 2008-09-15

> FMO06163.5prime
CAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCATGCTACGC
TTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATCTACGCCTC
GTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCCTGCGGCAT
CACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGCCCATGGAC
CAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCGCCACCTGG
TGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTCGCAACAAT
TACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGCACCGCCTG
CCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCGGGCGCCAG
TCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGCGGATGAGC
TGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCACAGGCAAC
ATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTGGCTGTTAA
ACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCAGTCACAGT
CGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATACCCACTTCC
AATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAGAACATCAC
TTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACTCAACGCAG
TGGACGGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGCAGGACCG
GAATCCAAGGTGATACAGGAAATTAAGGAGGCAAGAAAGAGGCGGCAGTC
CCTCTGCAAATCCGCAAAACCACCAGTGCCACCTGTGAAAACGACGAAGA
GCAAGTGCCAAGTGCTCCTGTAGATCCCTTCAGGGAGTGGCCCACCGAGA
CACTCTACGAGCAGCCACTGTGATGAGGAGATCGATGCGAACGGCATATG
TCCGAAAGGCGAAAGTTTATAAGCTTCCTGGTTCTTAATAACCTCACCGA
TGTCCTCACGATGCAGCCCGCATGTCCATCCGGCGACTTGGATGCATTAC
GGGAAAGAGAAGGGACGTGGGCCATGCATTTGTCTCTAGACATGTGCACC
CATGGA

FMO06163.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 3215 CG8668-RB 1111..2242 8..1134 5050 97.4 Plus
CG8668-RA 2889 CG8668-RA 785..1916 8..1134 5050 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8131425..8131913 8..496 2445 100 Plus
2L 23513712 2L 8132594..8133016 717..1134 1165 90.9 Plus
2L 23513712 2L 8131968..8132199 491..722 1145 99.6 Plus
Blast to na_te.dros performed 2014-11-28 20:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2508 448..612 145 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2299..2419 481..604 144 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..7070 448..675 141 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2486 487..614 135 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2437..2478 486..527 120 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2826 487..527 115 75.6 Plus

FMO06163.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:42 Download gff for FMO06163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 775..1926 1..1144 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:20 Download gff for FMO06163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 752..1903 1..1144 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:01 Download gff for FMO06163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 775..1926 1..1144 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:01 Download gff for FMO06163.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8131415..8131912 1..495 99 -> Plus
2L 8131973..8132194 496..717 100 -> Plus
2L 8132595..8133026 718..1144 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:42 Download gff for FMO06163.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8131415..8131912 1..495 99 -> Plus
arm_2L 8131973..8132194 496..717 100 -> Plus
arm_2L 8132595..8133026 718..1144 92   Plus