FMO06164.5prime Sequence
1115 bp (1016 high quality bases) assembled on 2008-09-15
> FMO06164.5prime
CAGTCGACATGGCCAAGCTAGCGACGGATCCAAACGCCTCCAACAACAAC
AGCTGCGAGGCGGTTAACAACAACCACAATGGCCAGAACCAGAGCCAAAA
CGGAGGCGCCTCCAATTACCAGGCCCTGCCTCTTACGCCTGCTCCGGCCA
ACACGCCACTCCACAAGGCCATCAAGCACGACCTCTTCCCGGAGGTCACC
TTCTGCAACCTCTCCGTAGAGGAGCTCGCAGATGGGGCTGGACACAGCCG
TGTGGTAAGGAGCAGTGTCATCGAACTGGAGGACGGCACCATGACGTGCC
TGATGAACGGAAATGGGCAGGTGAAGCGTCGCAAACGCCTGATCTCGAAC
GAGTCCGGCGACTCGATCGACTCCAGTTCCACGGAGAAGAAAACGCCCAA
GATGCCCGACGGTGGATATGGGTGGGTGGTGGTGTTCGCCTCTCTGGTCG
TGTCCCTTATAGCCGACGGACTGAGCTTCTCATTTGGCCTAATAAACGTG
GAACTGCTGGAATACTTCGGAGAGTCCACTTCGAAGACCGCCTGGATATC
CTCGCTATTCTTCTCCGTGCCCCTGTTGATGGGACCCATCTGGTCCAATC
TGGTGGACAAGTACGGCTGCCGAAAGATGACCATCCTCGGCGGAGTGGTC
TCTGCCTTTGGGTTTGCTCTGTCTTCGTTTTGCAACTCGATCGAGATGCT
CATGGTGACCTTTGGTATCATTTCGGGACTGGGCCTAGGCATCGGGTATG
TGACCGCGGTGGGTGTCATTGCATTCTGGTTTGACAAGAAGCGCACCTTT
GCGACCCGGCATCGGAGCATCGGGGCACCGGGCATCGGGGACCTTTTGTC
TACGCCCGCCTTACTTTCCTATCTATCGAATCGTACGGCTGGCGCGAACC
CACTCTAATCCTTGGCGGCACCATGCTCACGCATGCGTTGCGGCGCCCTC
ATGCCCGATCCCGACTGGCTGATCGAGGAAAACGTCTAAGATCGATCCAA
AGCCTCACCCCCTTCTCGACTTCATGTCTGCCTGGAGAAATAAAAAGCTG
CTGACCCGGCATCACAAGGGAGCTGTGCTAACTTCGTTGGTGACACAAAA
CACCGGAGGGCACAC
FMO06164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45092-RF | 5152 | CG45092-RF | 1486..2583 | 5..1094 | 4825 | 97.2 | Plus |
| CG45092-RE | 4496 | CG45092-RE | 1356..2453 | 5..1094 | 4825 | 97.2 | Plus |
| CG45092-RD | 5083 | CG45092-RD | 1943..3040 | 5..1094 | 4825 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6703422..6704397 | 983..5 | 4360 | 98.2 | Minus |
Blast to na_te.dros performed 2014-11-28 22:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1587 | 18..107 | 126 | 60 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 677..747 | 35..108 | 111 | 63.5 | Plus |
FMO06164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:16 Download gff for
FMO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3409-RA | 1938..3057 | 1..1109 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:21 Download gff for
FMO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3409-RA | 1911..3030 | 1..1109 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:41 Download gff for
FMO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45092-RD | 1938..3057 | 1..1109 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:41 Download gff for
FMO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6703283..6704398 | 1..1109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:16 Download gff for
FMO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2590788..2591903 | 1..1109 | 96 | | Minus |
