FMO06165.5prime Sequence
1138 bp (1033 high quality bases) assembled on 2008-09-15
> FMO06165.5prime
CAGTCGACATGGCTGCCGCCTGGAGTTGGCGAGCCAGTCACTCAACGATC
ACAATGACAAGCGGATCGCTGGTAGTGCTCTTCCTGTTGCTTTCGATTTG
GCAGCCAGCCGTGCAGGTTGAAGGACGACGCCAAATGGCCAATAGCCAGG
AGATGATCAAGGATCATTTGGGAGCCAGGAGTCAAAACAAGACACCAGCC
ATCACGAACAATGCTAATCAATCGAGCACATCCAGTGCGGATTTGGATGA
TGGCGCCGCAGATGATGATGATAACAAGGCCGATTTGCCGGTGAATGTCA
GTTCGAAACCCTACTGGCGTAATCCCAAAAAGATGAGTTTTCTGCAGACG
CGACCCTCGGGCTCACTGCTCACCCTCAATTGCCATGCCCTGGGCAATCC
TGAGCCCAATATCACATGGTATCGCAATGGCACCGTCGACTGGACGCGCG
GCTATGGGAGCCTGAAGCGGAATCGATGGACCCTGACGATGGAGGATCTG
GTGCCGGGCGATTGTGGCAACTACACCTGCAAGGTGTGCAATTCATTGGG
TTGCATTCGTCACGACACCCAGGTGATTGTAAGCGATCGAGTTAATCACA
AACCGATCCTGATGACCGGTCCATTGAATCTCACACTGGTGGTCAATTCC
ACAGGCAGCATGCACTGCAAATATCTATCGGACTTGACCAGCAAGAAGGC
GTGGATCTTTGTGCCCTGCCATGGCATGACCAACTGCTCCAACAATCGAT
CCATCATTGCCGAGGATAAGGATCAGTTGGACTTCGTGAACGTTAGGATG
GAGCAGAGGGCTGGTACACGTGCGTCGAAAGCAACAGCCTGGGTCAATCC
AATAGCACTGCATATCTGCGAGTGTTGCGAGTCTTCACGTCTTGGAAGCC
GGAGTTGCCAGTGGTTCCACTTCACCTCGACCAGCTTCGTGTATATCTTC
GTCTTTGGCGGACTTATTTCATCTTTATGACCACCCTGTTTGTGTTCTAT
GCCATCCGAAGATGAAACATGAAAAGGGTGAAACAACGCATCGAACGGTC
ACCAGTTGACAAGAAGTGATCATCTTCAGCCGAGGTGGCGAACCTCCATG
GTCATGAACCCATGATATGCGTGTTAGGATACGAAACA
FMO06165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 3492 | CG7223-RC | 788..1938 | 9..1138 | 5080 | 97.3 | Plus |
| htl-RA | 3611 | CG7223-RA | 907..2057 | 9..1138 | 5080 | 97.3 | Plus |
| htl-RB | 3838 | CG7223-RB | 1134..2284 | 9..1138 | 5080 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18046880..18047920 | 1045..9 | 4820 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:59 has no hits.
FMO06165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:04 Download gff for
FMO06165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..2226 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:22 Download gff for
FMO06165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RC | 783..1875 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:10 Download gff for
FMO06165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..2226 | 9..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:10 Download gff for
FMO06165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18046828..18047920 | 9..1090 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:04 Download gff for
FMO06165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13872550..13873642 | 9..1090 | 98 | | Minus |
