FMO06166.5prime Sequence
1163 bp (1043 high quality bases) assembled on 2008-09-15
> FMO06166.5prime
CAGTCGACATGAAAAACGACGTCGTGCGATGGAGCAGGCAGCCAACTAGC
AACACCACTAACAGCAGCAGCAGCAGTAGAAGCGATAGCAACAGCACTCA
TAAGCACAGAAGCAAAAGCAACAAATTAAATGCTCGACAATTAGGGTCAA
ATGCTGCCAGAAGTTGTCAGCAAAGATCCTCTGTGGCAACAACACTAGAA
GATGAACAACAAACAATCATTGAATGTGATATAGGAAATTTCAATTTCGA
TTGCAATTTATTCAAAACTAGTTTTTTAACGCAACACAAACAGAAACGTA
GTGGCAAGAGCAGCAGCAAAAGTAAGAGCAACAGAAGTAGACCCCTAGCG
AAAACGAAAGCGGTGTTTCTATTAGCTCTGCAATTTAGTGCCGTAGTTTT
TTTATGTAATATTAATGTCGGTTTCGTGGCCGGAAGTGTGGCAACTGCGG
CATCATCGGCAGGCGGCTCATCGCCGGCAGCTCCATCATCTGCGCCCTCA
TCCCCGCCCACAGTTGCTGTACCACCGCCGCCGCCACCTTCGTCGGCACT
CAAAGTGGATCCAAATGGTCAGTCACCAGTGCTGCCGCCCTACGTTCTCG
ATTATGAGACGGGGGGCAAGGCCAAGCTAACGCCAAACAATGGCAAGTTC
GGCCAATCGGGCAGTTCCGGGAGCAATAACAACCACATCGTCGGACACTA
TACCCACACCTGGGCGGTGCACATACCAAACGGCGATAATGGCATGGCCG
ATGCGGTTGCCAAGGATCACGGATTCGTCAATTTGGGCAAGATCTTCGAT
GATCACTACCACTTCGCACATCACAAGGTCTCGAAGCGGTTCGCTCTCCC
CGCCACGCATCACCAGACTCGCCTGGATGACGACGATCGCGTCCACTGGG
CGAAGCAGCAGCGGGCCAAGTCCCGATCCAAACGGGACTTTATCCGCATG
CGACCCTCAAGGACCTCCTCGCGAGCATTGTCGATGGTGACGCCATGTCC
TTTAACGACTCCAAGTGGCGAGATGTGTATCTGAATCGTGGTGGTGGCCT
GAACATGAATGTGATACCCGCCTGAAGATGGGCATAACCGGCAAGGGCGG
TGGTGACATCTGGATAATGGCCTGGATCGATCTCGACTAAGAATACTACG
ATCCAAGCTGTAC
FMO06166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fur1-RJ | 5346 | CG10772-RJ | 738..1864 | 9..1126 | 5310 | 98.6 | Plus |
| Fur1-RI | 6225 | CG10772-RI | 738..1864 | 9..1126 | 5310 | 98.6 | Plus |
| Fur1-RH | 3735 | CG10772-RH | 738..1864 | 9..1126 | 5310 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25396712..25397494 | 791..9 | 3915 | 100 | Minus |
| 3R | 32079331 | 3R | 25357888..25358118 | 1019..790 | 965 | 97.4 | Minus |
| 3R | 32079331 | 3R | 25357603..25357701 | 1126..1033 | 285 | 92.9 | Minus |
Blast to na_te.dros performed 2014-11-28 20:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6506..6817 | 32..340 | 156 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6853 | 282..363 | 146 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6663..6786 | 212..339 | 126 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6840 | 281..339 | 119 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6765 | 281..339 | 115 | 66.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3337 | 304..350 | 111 | 72.9 | Plus |
FMO06166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:16 Download gff for
FMO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fur1-RH | 734..1872 | 1..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:02 Download gff for
FMO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fur1-RE | 732..1870 | 1..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:49 Download gff for
FMO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fur1-RH | 734..1872 | 1..1132 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:49 Download gff for
FMO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25357595..25357700 | 1034..1132 | 91 | <- | Minus |
| 3R | 25357871..25358116 | 792..1033 | 96 | <- | Minus |
| 3R | 25396712..25397498 | 1..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:16 Download gff for
FMO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21183317..21183422 | 1034..1132 | 91 | <- | Minus |
| arm_3R | 21183593..21183838 | 792..1033 | 96 | <- | Minus |
| arm_3R | 21222434..21223220 | 1..791 | 99 | | Minus |
