FMO06167.5prime Sequence
1159 bp (1002 high quality bases) assembled on 2008-09-15
> FMO06167.5prime
CAGTCGACATGCACTGCGGCAACATGCTGCTGGGCGTTGGCCTCATGTTC
CTGGCGCTATATGTCCCCTGCGCCGAATCCAAAAAGGAGCACGAGTGCAC
CAGCATCGACATCCGAAACGAGTGCAAGAACATGCATCTGCTGGACAACT
GCACCGTTGTCACCGGATACGTGATGATCACGCTGATCACTATCGAGCAG
CGCTGCAATTTCTCGGAGTACTCGTACCCACTGCTCACCGAAATCACCGA
GTTCATGATCTTCACCGACGTGCGCGGCCTGGTCAACATCACCGAAATGT
TCCCGCACCTGACCGTCATTCGGGGTCGCCGGCTGTTCCTTAACTACGCG
CTCGGAGTGACCAACATGCACGAGCTGGAACAGTTGGTATTTCCCAAATT
GGTGGCAATACAACGAGGACAAGTCTACATCGGCAGCTGCCCCAAGCTCT
GCAGCATCGGCCGTGTTAATTGGGATCTGCTGACTCTCACCAGAGGCGAG
AACAACATAATAATGGTGAATAAAAACTGCAGCACACCGGTTTGCTCTGG
ATGCAGTTCCTCCCACTGCTGGTCGAATCATTACTGCCAAAGATCCATCA
ACGAAAATGTCGCCAATCCAAAGGCCAACATAAACGCCTGCCATGAGGAG
TGCTTGGGCGGCTGCAAGAACAACTCATCATCCCCAGCTGACTGCAGCGT
TTGCCGCGGACTCAGTGATGATGGTGTCTGCGTGAAGAGCTGTCCGAAGG
ACAAGTACGTCATGGAGAACTATCAGCGCTGCTATACGAAGGCCGAGTGT
GTGCTAAGCACGGCTATGTTATTTCCGGATCACAGTGCGTAGCTTTCTGT
CCCAGCGGCTACAAGACGAACAACCGGTCGGAGTGCGTGCTCTGTAGCCC
CGATGAGGCTTGTATCAGCTTCTGCACGCCGGAGTGCCAAGGAAAAGCGT
TCACCGTATACATCTGGCTGATGAGAGATTTGCGTGCTGTCGATCTTCAA
TGGCAGCCTGTCATCCAATCGCACCAGGTGACGAAACGCAGCTGTACGGG
CTCCCTAGTATGCGCGAGGTTCGTGGGCATTTAAAGTCATCCGTCCTCCA
GCTAAGAAGCCTGCATTCCTGGAAACCTTAAGCGCGTTCACGGGTGATCC
CTAAGAATC
FMO06167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10702-RD | 4041 | CG10702-RD | 729..1891 | 7..1151 | 5165 | 97.3 | Plus |
| CG10702-RC | 3893 | CG10702-RC | 1021..2183 | 7..1151 | 5165 | 97.3 | Plus |
| CG10702-RA | 3934 | CG10702-RA | 1062..2224 | 7..1151 | 5165 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19068203..19068579 | 383..7 | 1885 | 100 | Minus |
| 2L | 23513712 | 2L | 19067782..19068026 | 625..381 | 1225 | 100 | Minus |
| 2L | 23513712 | 2L | 19067256..19067521 | 1010..751 | 985 | 96.6 | Minus |
| 2L | 23513712 | 2L | 19067570..19067700 | 756..626 | 655 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 1196..1225 | 82..111 | 114 | 86.7 | Plus |
FMO06167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:45 Download gff for
FMO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10702-RA | 1055..2234 | 1..1159 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:25 Download gff for
FMO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10702-RC | 989..2168 | 1..1159 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:07 Download gff for
FMO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10702-RA | 1055..2234 | 1..1159 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:07 Download gff for
FMO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19067164..19067517 | 755..1093 | 93 | <- | Minus |
| 2L | 19067572..19067700 | 626..754 | 100 | <- | Minus |
| 2L | 19067782..19068023 | 384..625 | 100 | <- | Minus |
| 2L | 19068203..19068581 | 1..383 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:45 Download gff for
FMO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19067164..19067517 | 755..1093 | 93 | <- | Minus |
| arm_2L | 19067572..19067700 | 626..754 | 100 | <- | Minus |
| arm_2L | 19067782..19068023 | 384..625 | 100 | <- | Minus |
| arm_2L | 19068203..19068581 | 1..383 | 98 | | Minus |
