FMO06169.5prime Sequence
1176 bp (1048 high quality bases) assembled on 2008-09-15
> FMO06169.5prime
CAGTCGACATGTCCGCGAAGCCAAGTGCCAATTCGGAGGACATCCTTCTG
GCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCATGACAACGCACAGAT
TGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATCCGAATTGGCACTGG
TTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCCAGCCCCAGGTGGAA
GCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGCGACAGCGGAAGCAT
AATACTAGTGTCCGATGATTCCTCAGCTACGGCGTGCAGCTTCCTTCACT
CGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAACTGCGCAAGGAGTTC
ACCGAGGACTCCTCATACATCGATCTCTCACTTGATTCGGGCAGCAGCAA
TCCTAGTGCCATTGAAACCGACATGAAGACACACAAACTGGGCGCGAAGC
GCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCAAAAAGATTTCTTAC
CAGAATCTGAACGAGATGAACATCTCCTCGAATCAACCCGTGGTGACGCG
CAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCAGTTTGACTACTCCT
CCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACTCCGACGAGGTGTCA
CTGGATGCCGACGACGATGAGTATGAGGGAGAAGATTTCGATCAGCTCAA
GTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACACCAGCTTAGCCTTCA
GCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACACCTCCGATGGTCTAT
GTCGAATTGGGCGGCAAAATCGTGATCATTAGGGATAAACCACAGCCCAA
TATCGTTCTGGAAGACGATAAGGAACTCAAGACGCAGATGCACAAGTTTT
TGGGTCTGATTCCATCACGTCGCAGCTCTTCGATCCGTCGGAATAAATAT
GGATCGGGGGGATATGAGATGGATGTGTACGTACCGACCAGTCTTGTTAC
CATCCATCACTAGGTCCCTCACCAGCCCAGTTACTCCATCGGCCAAGTTC
ACGATTATGTAGAAACACCGCGAACTTCCATTTGCTCAACCTGAAATTAT
TCGCAATCCTCTACCACCGACGTGATGTGACTTCAGAACTGAAGCCCATG
GGATGAACTCTTATATCCAGGTGAAT
FMO06169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2694-RD | 3066 | CG2694-RD | 494..1668 | 4..1176 | 5120 | 96.7 | Plus |
| CG2694-RB | 3152 | CG2694-RB | 580..1754 | 4..1176 | 5120 | 96.7 | Plus |
| CG2694-RA | 3075 | CG2694-RA | 503..1677 | 4..1176 | 5120 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2715514..2716068 | 496..1045 | 2450 | 98.2 | Plus |
| X | 23542271 | X | 2714885..2715280 | 4..399 | 1965 | 99.7 | Plus |
| X | 23542271 | X | 2715338..2715433 | 400..495 | 480 | 100 | Plus |
| 2L | 23513712 | 2L | 6759146..6759281 | 924..789 | 290 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:19 has no hits.
FMO06169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:51 Download gff for
FMO06169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2694-RA | 500..1549 | 1..1045 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:28 Download gff for
FMO06169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2694-RC | 157..1206 | 1..1045 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:37 Download gff for
FMO06169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2694-RA | 500..1549 | 1..1045 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:37 Download gff for
FMO06169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2714882..2715280 | 1..399 | 99 | -> | Plus |
| X | 2715338..2715433 | 400..495 | 100 | -> | Plus |
| X | 2715514..2716068 | 496..1045 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:51 Download gff for
FMO06169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2608915..2609313 | 1..399 | 99 | -> | Plus |
| arm_X | 2609371..2609466 | 400..495 | 100 | -> | Plus |
| arm_X | 2609547..2610101 | 496..1045 | 98 | == | Plus |
