FMO06170.5prime Sequence
1159 bp (984 high quality bases) assembled on 2008-09-15
> FMO06170.5prime
CAGTCGACATGGAGCAAATAACGAACTACTTCGAGCACATGGATTACGTG
TCCTTCAGCGTGGTGGCGCTGCCGTGCGTCGTCATCGCCGTCTACGGATT
CCTGCAGGTGGCCAGTGGCCTGGCCAAGTGCAAAAATGACAAAATGCAGA
GTTGCAACAAAAACAGCAGTAGCCGTATCACCACCACCAACAACAACGTT
ACTACAACTAGCAACATTAGCGGCAACAGCAGCAACAAGCGCTGCCCTCA
GAAGTACACCGGCAACACCCTAGCCGTCAACAGTAACATGCTGGCCTATC
AGCAGCAAGCCACCGCCGGTGGCAAGAACTCCACTCGGAAGAGTCGTCAC
AACAACAACAAGCAAAATCATCAGCAGCAACAACAACAACAGCAGCAGCA
GTTTGATCATATCCACAAGCGCAATGGAACCGCTGGAGGCACCGGATCCG
AGTGCTCTCCCGCTGCACCCACATCCAACTGGCTCCAACGGGGCTACGGA
CGACAGTTTGTCCATTCTTCATGCATCGAAGACAAACTCCTAGGTCATCA
CAATCCGGGCCATCGCAATAGCACCAGCAGCGACGCGACCAGCGAGGATA
TAGACTCCAGTAGCGAGCTTCCAAACAAGTCGAAGGGAAATTCATGCGCC
GGCAGCATCCATGCTTCAGGCGGCAGCAAGAGTCGCTCGAAGCGCCACCA
AAAGCAGTCCGGGCCAGCAGACTCGCAATCCCGATCACAATGGCCAAAGG
ACCGGAGCAGCTACCCCCTGTACGGGCCAGAAAGCCAAGCAGGGGAATGC
CAAGTGGCGCCAGCAGCAACCCAATCCCAGCAGCAACAACCAACAGCAGC
AGATGCAACAACAGGATGCACAGCAGAAGCGCGGCAGGACAAGAAGCCCG
GGAAGTGGAGCACAACATCATTGACAACCCAAACAGCAATCACGGCGGCA
GCAGTCAACAGAAGACTTGCGACAGCAGCCTCCTCCTCTGCGCTGAGTTC
CGCCAACAATTCGGCCACCACATCGGCCACCAGTCGCCACAAATTCGCCA
ACAGTAACCCCGGTGCCAATGGAAATCGGGAAGCCGATTCGAAACCGTCA
CTTGGAATGGCGCCGGAACAAGAGCTTGGTCGCCCAAAATGCCCAACTTC
TGGGATCTC
FMO06170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42666-RB | 3467 | CG14801-RB | 631..1770 | 9..1150 | 5150 | 97.6 | Plus |
| CG42666-RK | 3700 | CG42666-RK | 252..1269 | 131..1150 | 4525 | 97.2 | Plus |
| CG42666-RH | 2784 | CG42666-RH | 71..1087 | 132..1150 | 4520 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1850618..1851170 | 530..1079 | 2220 | 95.9 | Plus |
| X | 23542271 | X | 1843692..1844087 | 136..531 | 1980 | 100 | Plus |
| X | 23542271 | X | 1831933..1832059 | 9..135 | 635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6923 | 183..387 | 292 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2659 | 125..400 | 280 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2527 | 175..400 | 264 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..7086 | 125..409 | 264 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6932 | 225..442 | 248 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7032 | 125..423 | 242 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6693..6951 | 109..385 | 234 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2563 | 130..375 | 228 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2832 | 162..399 | 203 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..7035 | 125..397 | 198 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2741..2971 | 171..397 | 196 | 60.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1165 | 142..265 | 190 | 62.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1154 | 170..266 | 169 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 184..242 | 132 | 73.3 | Plus |
| BS | 5142 | BS BS 5142bp | 2017..2105 | 154..239 | 132 | 62.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1163 | 139..230 | 129 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1107..1165 | 150..210 | 129 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1508..1591 | 155..240 | 128 | 64.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1143 | 202..288 | 128 | 66.7 | Plus |
FMO06170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:33 Download gff for
FMO06170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42666-RB | 604..1755 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:03 Download gff for
FMO06170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14801-RB | 604..1755 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:13 Download gff for
FMO06170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42666-RB | 623..1774 | 1..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:13 Download gff for
FMO06170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1831925..1832059 | 1..135 | 97 | -> | Plus |
| X | 1843692..1844087 | 136..531 | 100 | -> | Plus |
| X | 1850620..1851240 | 532..1153 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:33 Download gff for
FMO06170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1725958..1726092 | 1..135 | 97 | -> | Plus |
| arm_X | 1737725..1738120 | 136..531 | 100 | -> | Plus |
| arm_X | 1744653..1745273 | 532..1153 | 95 | | Plus |
