FMO06171.5prime Sequence
1145 bp (979 high quality bases) assembled on 2008-09-15
> FMO06171.5prime
CAGTCGACATGATGATGATGGACACCATGGACACCTCGCAATCGCAGCCG
ATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGCGCAGCTCT
GGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGCCGAGGCTG
AGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGTACAAGGAG
CACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGCGAGGGCAA
GGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGAGCATCGAC
GACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGGGACATCAC
CACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCGACCTCCGC
CTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGACCATCGAAT
ACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTGGTGGAGCG
ACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCGCACAACTT
AAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAGCCCGCCGA
CCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGGCCAGCTCG
ACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCATCAGCCCC
TCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGGCAATGCTG
GCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTGGAGGAGCA
CAATCCGCCGTGGGGTCTGGCGGCTATCCCAAGACAGAATCGAGCAAGTC
GAGTGCCACCGCAAGCGGCATGCAGTGCAGTGCCAGCAGCAGCAAATACA
AGTAGCCACAAGCACGCCACCACATTCAAGGAATATAAGCAGCAGTAGCA
ATCAGCAGGCATCGACTGCGAGCAGCAGTAGTGCACCAGCCTTTTATGTC
TCGTGCCACTGTCCACGGCCAACGTACCTGGAATCATCCTGCCACCAGCA
GCACTAGCAGAGTACCCACAAGCGAAATCCCATCGGCAACGTCGCGAGAA
GCATGGGTGCAAATCCCAGCATCAAGCACCAGCTAAGACAAATGC
FMO06171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alh-RO | 5324 | CG1070-RO | 781..1907 | 9..1137 | 4975 | 96.8 | Plus |
| Alh-RN | 5100 | CG1070-RN | 781..1907 | 9..1137 | 4975 | 96.8 | Plus |
| Alh-RM | 5196 | CG1070-RM | 781..1907 | 9..1137 | 4975 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7107078..7107644 | 575..9 | 2835 | 100 | Minus |
| 3R | 32079331 | 3R | 7101613..7102098 | 1060..575 | 1875 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:48 has no hits.
FMO06171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:13 Download gff for
FMO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RM | 773..1874 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:14 Download gff for
FMO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RE | 766..1867 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:21 Download gff for
FMO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RM | 773..1874 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:21 Download gff for
FMO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7101613..7102097 | 576..1060 | 95 | <- | Minus |
| 3R | 7107078..7107652 | 1..575 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:13 Download gff for
FMO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2927335..2927819 | 576..1060 | 95 | <- | Minus |
| arm_3R | 2932800..2933374 | 1..575 | 99 | | Minus |
