FMO06173.5prime Sequence
1113 bp (969 high quality bases) assembled on 2008-09-15
> FMO06173.5prime
CAGTCGACATGACCATTCCATCGAGACCGGCGCCCGCACCGCCCGGATCA
CGTGGCCAGAGCGCAGCGGCTGGGGCAAATGCCAGCCTGGAACAGCTGCG
TCTCCAGCTGCAGCAGCAGCACCTGCAGCAACAGCAAGGCGCCGGCGGTG
GACTCCAAAAGCTGACCATCAAGCTGCCGCCACCGCCCAAGGGACCGCTG
CAGTCGCAGCACAAACGTACCACCGTCAGCAACAATAACAACGGCAGCCT
CTTCGACGAGCCAACGGGTGGCACGAGCATTACGCGGAAGTTTCCACAGG
CACGCTACACGCCGGCCACCAACTGGGACGACGATCCATTTGGAGGCGGG
AGCAACGGAAATGATCGCTTCAAGAAGATGCCACCGCCGCGACCGCCGCC
GCCCAAGGTGCTGGTCAATGGGCAGAACATGACCAAGTCCAACTCCTCGA
TGGCATCGGCGGTCACTGGCGGCACGGGCAGACTCATGTCGAACATTTTC
CATCGCAAGAAGTCGACGTCCACGGCATCCGCCGCTGCTTCCAAGGCTGC
AGCGGAAAATCGTGTCTACGGCCTGAGCAGCGGCAATGCCGGTGCAACAC
CAAGTAACAACAGCAGCAGCAGTGCATCGTCGGCGGCCTTTAGCAATGTG
GATTGGAATGCAGCGTGGAACACGGCCACCACTACCACAACCACCACCTC
GAGCAGCAGCCACAGCTCCCATTATGCCTCGCAGCAGACGGCCGATGCGC
AGCTCATCAGCTTCGATTCGCCCCCTTCGTCGCCAACCTTTACCCAGAAG
TCCAATAGCGACTGCGTCAGCGTGGACAGCTTCAGTTCGGACAGCAACTT
TAGTTCGCCCAACAATGGCAGCGTTTCGCGCCGGAGAGCGGATTCGAAGG
ACGATTATCATCAAATCACGACCCTCCAACACAAAGTCCGCTGGATCCGT
GGGAGCGGTGGATAAGCGTTGGGACTCGGGGGAGTCAATAGCTTTGGCTC
CGCCCCAGTGCGTCAGACGTACCAGATGAGTCGCGCGGATCGTAAATCCG
CTGGTGCAATGACAGAGTCTGTTGCGCACACTCAATCGCTAACAATGTCC
AACATCTTCAGTC
FMO06173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)05822-RD | 2580 | CG7129-RD | 64..1166 | 8..1110 | 5035 | 97.7 | Plus |
| l(3)05822-RC | 2603 | CG7129-RC | 87..1189 | 8..1110 | 5035 | 97.7 | Plus |
| l(3)05822-RB | 2634 | CG7129-RB | 118..1220 | 8..1110 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18290397..18291499 | 1110..8 | 4735 | 97.7 | Minus |
Blast to na_te.dros performed 2014-11-28 21:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6887 | 86..257 | 183 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6885 | 106..279 | 174 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6900 | 105..246 | 173 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2484 | 91..248 | 172 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2502 | 91..248 | 163 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2471 | 105..259 | 162 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6923 | 55..245 | 149 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1582 | 83..136 | 132 | 74.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3311 | 67..137 | 132 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6828..6939 | 91..202 | 128 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6962 | 5..258 | 120 | 54.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1140 | 63..136 | 120 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7379..7447 | 93..162 | 113 | 64.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1107 | 91..136 | 113 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6892 | 55..137 | 112 | 63.6 | Plus |
FMO06173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:06 Download gff for
FMO06173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)05822-RB | 113..1220 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:34 Download gff for
FMO06173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)05822-RB | 113..1220 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:44 Download gff for
FMO06173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)05822-RB | 113..1220 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:44 Download gff for
FMO06173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18290397..18291506 | 1..1110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:06 Download gff for
FMO06173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14116119..14117228 | 1..1110 | 97 | | Minus |
