FMO06174.5prime Sequence
848 bp (848 high quality bases) assembled on 2008-09-15
> FMO06174.5prime
CAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCGCTGGTTTC
AATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGAGGCTTCAA
GCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCATCATCTACA
AGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGGGACCCATT
GTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAAAACATATA
CTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTACGGATCTCA
TCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTGAGGTGCGC
GTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGCTACCAGGG
TCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGACTGGACCCC
ACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGCCGTACGCC
ACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAAAGTCGCTG
GAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCGCGATGCCA
TCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACATCGATCTG
TGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTATGAGCTGGC
TAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTTCAAGACCGGAACC
TCACCGTGCTGCACACCAACCATTAAGGACCTACTCGTCACCGAACGCGT
CCAGGCGGTGCCCCATGGAGATTTTCTGCAAGCTTTCTAGACCATTCG
FMO06174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2-RA | 1034 | CG3329-RA | 118..931 | 9..824 | 3985 | 99.5 | Plus |
| Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 100..292 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15000645..15001216 | 251..824 | 2675 | 99.3 | Plus |
| 3L | 28110227 | 3L | 15000199..15000379 | 70..250 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 15000068..15000129 | 9..70 | 310 | 100 | Plus |
| X | 23542271 | X | 5809181..5809299 | 100..218 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:03 has no hits.
FMO06174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:18 Download gff for
FMO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2-RA | 118..939 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:35 Download gff for
FMO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2-RA | 113..934 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:53 Download gff for
FMO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2-RA | 118..939 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:53 Download gff for
FMO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15000068..15000129 | 9..70 | 100 | -> | Plus |
| 3L | 15000200..15000379 | 71..250 | 100 | -> | Plus |
| 3L | 15000645..15001224 | 251..833 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:18 Download gff for
FMO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14993168..14993229 | 9..70 | 100 | -> | Plus |
| arm_3L | 14993300..14993479 | 71..250 | 100 | -> | Plus |
| arm_3L | 14993745..14994324 | 251..833 | 98 | | Plus |
