FMO06175.5prime Sequence
1146 bp (973 high quality bases) assembled on 2008-09-15
> FMO06175.5prime
CAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGTCTGTGGGC
TCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATTCATTTTAT
ATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTATAATACAC
GAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCTACTTGTTG
ATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTGATCTCGAT
GCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAACATTTGGA
TATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGCTGGCGGTG
GGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATCGATGATCC
CAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCTGGTGGTGA
TCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAAGATCCTGG
GTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAGTCTCGGTT
TAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACAAAGGAAAG
TGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCCTGCTATTC
TGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACGGACATCGC
CCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCCGTCGGATG
TGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCGAACGCGAG
GCCATGTGAGGCAGCGCAAAAATGGCACCTATGAAGTTCCTCAGCGGCGT
ACCGATTACGGAGCGAACCCAGTTCCTAGCACTCAACGATGCCAAAAACT
ATGACTTCTTTCAACGGTTCATCCACTATATGTACTTTGCCCAGGGAGCC
TACGGGTGGGCCCATGTACGTCATCTTCAATCGCAGCAGATGGTGGCCAT
TTGTTGCCGGAACTGAATGCTTTTGGCTGCTGTTGCCGTAAAGTGATGAT
TACAAAGGTATATCCAGAACATTTGCTGCCTGGCCACCTATTGCATGCTG
AAAAGACGCCCTCCGCTGGGCGAACTCGATTCCGTTACGCCACCCT
FMO06175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inaE-RF | 5698 | CG33174-RF | 810..1943 | 9..1144 | 5015 | 96.9 | Plus |
| inaE-RE | 5086 | CG33174-RE | 810..1943 | 9..1144 | 5015 | 96.9 | Plus |
| inaE-RA | 4004 | CG33174-RA | 810..1943 | 9..1144 | 5015 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13802846..13803267 | 594..1017 | 1775 | 96.7 | Plus |
| X | 23542271 | X | 13802590..13802770 | 416..596 | 905 | 100 | Plus |
| X | 23542271 | X | 13801901..13802008 | 103..210 | 540 | 100 | Plus |
| X | 23542271 | X | 13802067..13802171 | 211..315 | 525 | 100 | Plus |
| X | 23542271 | X | 13802237..13802338 | 316..417 | 510 | 100 | Plus |
| X | 23542271 | X | 13801679..13801773 | 9..103 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:31 has no hits.
FMO06175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:55 Download gff for
FMO06175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaE-RA | 808..1889 | 5..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:37 Download gff for
FMO06175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33174-RE | 773..1854 | 5..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:46 Download gff for
FMO06175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaE-RA | 808..1889 | 5..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:46 Download gff for
FMO06175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13801902..13802008 | 104..210 | 100 | -> | Plus |
| X | 13801675..13801773 | 4..103 | 98 | -> | Plus |
| X | 13802067..13802171 | 211..315 | 100 | -> | Plus |
| X | 13802237..13802338 | 316..417 | 100 | -> | Plus |
| X | 13802592..13802769 | 418..595 | 100 | -> | Plus |
| X | 13802848..13803267 | 596..1017 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:55 Download gff for
FMO06175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13696625..13696802 | 418..595 | 100 | -> | Plus |
| arm_X | 13695708..13695806 | 4..103 | 98 | -> | Plus |
| arm_X | 13695935..13696041 | 104..210 | 100 | -> | Plus |
| arm_X | 13696100..13696204 | 211..315 | 100 | -> | Plus |
| arm_X | 13696270..13696371 | 316..417 | 100 | -> | Plus |
| arm_X | 13696881..13697300 | 596..1017 | 97 | -> | Plus |
