FMO06176.5prime Sequence
858 bp (853 high quality bases) assembled on 2008-09-15
> FMO06176.5prime
ATTAAACGAAGTTATCAGTCGACATGATCAAGGGCATTCTGATACAGCGC
AAGAGCCAGGAGGATGCCAGCTACACCAAGCAGCTCAAGATGGAGCACGC
CGATCTGGTGGCCGAGATGCAGACCGTGGAGAGCCTGCCCACCCACGAGC
GACTCCAGCTGGCCAGACTACGTCGTGCGCAGCAGCTGAAGCTGTCCCGC
CAGAAGGACAAGGAGTGGGCCAAGTTGCAGCGGGCGAAGGGCAACACGGC
GAGCGGCGGCAGCGGAACCGGATCGCTGGGCAACGGGCTGATGAACGGCA
ACGGAGATACCACGCACCACTTCCGGCACGCCAATGGTTCGGGCACGTTG
AGCGGCAGGCGGCACATATCCTTCGAGAACAGCGTGGTGCTCCTGGAGGC
GGCATCCCGGAACGACATGCCCGAGGTGGCCGCCCTGCTGCAGCACGGAA
TCACGCCGGATGCCGCAAACGAGGATGGACTGACGGCGATGCATCAGGCG
TGCATCGATAACAACGTCGAGATGCTGCAGCTGCTGCTGGAGTACGGTGC
GAATGTGGATGCGCAGGACAGTGATAAGTGGACGCCGCTTCATGCGGCTG
CCACCTGCGGCCACCTCGAGCTCGTCCGCATCCTCATCCGGCACGGCGCC
AATCTGCTGGCCGTCAACACCCGACGGCAACATGCCCTACGACCTGTGCG
ACGATGAGAAAACCTTGGACTTCATCGAGGGGCGAGATGGCTCAACGGGG
CGTGACCCAGGAGCTCATCGACGAGACGCGCTCCTCCACGGAGCGGATTA
TGCTGCGCGACCTAATGGAGTTGGCGCGCACAGGAGGAGATTTGGAGGAG
CCGGACTA
FMO06176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MYPT-75D-RD | 4016 | CG6896-RD | 866..1700 | 22..858 | 4135 | 99.8 | Plus |
| MYPT-75D-RC | 4663 | CG6896-RC | 1513..2347 | 22..858 | 4135 | 99.8 | Plus |
| MYPT-75D-RB | 3872 | CG6896-RB | 1040..1874 | 22..858 | 4135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18662624..18663310 | 170..858 | 3345 | 99.7 | Plus |
| 3L | 28110227 | 3L | 18661896..18662043 | 22..169 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:46 has no hits.
FMO06176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:31 Download gff for
FMO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MYPT-75D-RB | 1037..1873 | 19..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:38 Download gff for
FMO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MYPT-75D-RA | 820..1656 | 19..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:47 Download gff for
FMO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MYPT-75D-RB | 1037..1873 | 19..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:47 Download gff for
FMO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18661893..18662043 | 19..169 | 99 | -> | Plus |
| 3L | 18662624..18663309 | 170..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:31 Download gff for
FMO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18654993..18655143 | 19..169 | 99 | -> | Plus |
| arm_3L | 18655724..18656409 | 170..857 | 99 | | Plus |
