FMO06177.5prime Sequence
1032 bp (64 high quality bases) assembled on 2008-09-15
> FMO06177.5prime
CAATCCACATGCGTTTCTGCTTTGATCGGCTGTGCTTCGCAACCAAGCGG
CCAGCCCAAAACTCCAACAGCAATGCACCACACAGCAGCACCACAGTAGA
TGCACCACCACGTCCAGCGGATGTAGATGTAGCCACTGTACCAGTAGCAA
CACCAGGGCCACCACGACAACAGCCAGTTAGTAATCTGTTCTATGCCGAC
TACCATAAGCTGCAGCCGGCGATAATCGATCGGGAATGGGAACGGGACAG
AAATACAGATACAGATACCAGGAGCGAGGCCAAGCCACCGGACATTGTGG
AGCACATAGAACCCGTAGAGGAGCAGAGACAGATACACACACAGATACTG
TCGCCGGCAGAGATACACATACCGATACCCCCGACGCCCCCTGCCCCATC
GATACAGATACCGATACAGCAGCGCTATCGCCGGCACACCAGTGCCGAAG
ATCGCAATCTGAACACGAGGGAAAACTATTCTAATATTACGGATGCGTTA
CGAAAAGCAGCCAGTATGCAGCAGGAGCCGAACGCCAACTATCAATTCCC
AACCGACTTGGGTCTGGTGAGCATCGTCGACAATAATAATAACACAAACA
CCCATCCGAGTGGATCCAATAGCGGCAGCAACAACAACAGCAATATCAAC
AATAATCTGGTGGGTGGCATTGTGACCTTGCCGGCGGGTGGTGGTCTCAT
AGGTCTGGAGCATACGGAGTCGGGTCTGCGACTGATACCAGCACCGCCTA
CCCACTCGGATGTGCTGACCCACACGCTGATCTATGGCACACCGCCCTCG
GGCGCCCAGCAATTAACCAGGATCCCCAAATCCTTCTGCTTCACAGGAGC
TGCAGCTACAGCAACGCTATCAGCAATTGCAGCATCTTCAAGCGCATACG
CAGGGCCTGTACGCCATCAAAGTAAGTCAGGAGCTGTATAACCAACCCTC
TCCAGGATCAAGTCAACCGGTGCCATACCAGAGCCACTTGCCATTCACCA
CTTTACTGCATCCGCCCAAACGTTGACCTGCT
FMO06177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
for-RA | 4595 | CG10033-RA | 625..1654 | 9..1031 | 4270 | 94.8 | Plus |
for-RI | 4581 | CG10033-RI | 611..1640 | 9..1031 | 4270 | 94.8 | Plus |
for-RH | 4316 | CG10033-RH | 346..1375 | 9..1031 | 4270 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3639464..3640455 | 996..9 | 4145 | 95.5 | Minus |
Blast to na_te.dros performed 2014-11-28 18:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6886 | 46..176 | 161 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2667 | 621..653 | 138 | 90.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2440 | 570..651 | 131 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6861 | 570..651 | 131 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2413 | 570..651 | 129 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2429 | 617..655 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6754 | 619..655 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6909 | 569..651 | 111 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6810 | 570..651 | 110 | 63.6 | Plus |
FMO06177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for
FMO06177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
for-RH | 346..1340 | 9..999 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:39 Download gff for
FMO06177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
for-RA | 623..1617 | 9..999 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:56 Download gff for
FMO06177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
for-RH | 346..1340 | 9..999 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:56 Download gff for
FMO06177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3639461..3640455 | 9..999 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for
FMO06177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3639461..3640455 | 9..999 | 95 | | Minus |