Clone FMO06177 Report

Search the DGRC for FMO06177

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:61
Well:77
Vector:pMK33-CFH-BD
Associated Gene/Transcriptfor-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06177.5prime Sequence

1032 bp (64 high quality bases) assembled on 2008-09-15

> FMO06177.5prime
CAATCCACATGCGTTTCTGCTTTGATCGGCTGTGCTTCGCAACCAAGCGG
CCAGCCCAAAACTCCAACAGCAATGCACCACACAGCAGCACCACAGTAGA
TGCACCACCACGTCCAGCGGATGTAGATGTAGCCACTGTACCAGTAGCAA
CACCAGGGCCACCACGACAACAGCCAGTTAGTAATCTGTTCTATGCCGAC
TACCATAAGCTGCAGCCGGCGATAATCGATCGGGAATGGGAACGGGACAG
AAATACAGATACAGATACCAGGAGCGAGGCCAAGCCACCGGACATTGTGG
AGCACATAGAACCCGTAGAGGAGCAGAGACAGATACACACACAGATACTG
TCGCCGGCAGAGATACACATACCGATACCCCCGACGCCCCCTGCCCCATC
GATACAGATACCGATACAGCAGCGCTATCGCCGGCACACCAGTGCCGAAG
ATCGCAATCTGAACACGAGGGAAAACTATTCTAATATTACGGATGCGTTA
CGAAAAGCAGCCAGTATGCAGCAGGAGCCGAACGCCAACTATCAATTCCC
AACCGACTTGGGTCTGGTGAGCATCGTCGACAATAATAATAACACAAACA
CCCATCCGAGTGGATCCAATAGCGGCAGCAACAACAACAGCAATATCAAC
AATAATCTGGTGGGTGGCATTGTGACCTTGCCGGCGGGTGGTGGTCTCAT
AGGTCTGGAGCATACGGAGTCGGGTCTGCGACTGATACCAGCACCGCCTA
CCCACTCGGATGTGCTGACCCACACGCTGATCTATGGCACACCGCCCTCG
GGCGCCCAGCAATTAACCAGGATCCCCAAATCCTTCTGCTTCACAGGAGC
TGCAGCTACAGCAACGCTATCAGCAATTGCAGCATCTTCAAGCGCATACG
CAGGGCCTGTACGCCATCAAAGTAAGTCAGGAGCTGTATAACCAACCCTC
TCCAGGATCAAGTCAACCGGTGCCATACCAGAGCCACTTGCCATTCACCA
CTTTACTGCATCCGCCCAAACGTTGACCTGCT

FMO06177.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
for-RA 4595 CG10033-RA 625..1654 9..1031 4270 94.8 Plus
for-RI 4581 CG10033-RI 611..1640 9..1031 4270 94.8 Plus
for-RH 4316 CG10033-RH 346..1375 9..1031 4270 94.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3639464..3640455 996..9 4145 95.5 Minus
Blast to na_te.dros performed 2014-11-28 18:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6886 46..176 161 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2635..2667 621..653 138 90.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2440 570..651 131 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6861 570..651 131 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2413 570..651 129 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2429 617..655 114 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6754 619..655 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6909 569..651 111 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6810 570..651 110 63.6 Plus

FMO06177.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for FMO06177.5prime
Subject Subject Range Query Range Percent Splice Strand
for-RH 346..1340 9..999 95   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:39 Download gff for FMO06177.5prime
Subject Subject Range Query Range Percent Splice Strand
for-RA 623..1617 9..999 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:56 Download gff for FMO06177.5prime
Subject Subject Range Query Range Percent Splice Strand
for-RH 346..1340 9..999 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:56 Download gff for FMO06177.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3639461..3640455 9..999 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for FMO06177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3639461..3640455 9..999 95   Minus