FMO06178.5prime Sequence
1070 bp (709 high quality bases) assembled on 2008-09-15
> FMO06178.5prime
CAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACAATGGCTGC
GGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATCGAGGACAC
CCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCAGGCCCAGC
CTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCGAGGAGAAC
CGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCCCCACCGAC
CACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAATGTGGAGC
TCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAATATGTCCTCGTCC
AACCGCATCACCACGCCAACAGGCAGCGAAATGGACGAGGACGAAATGGT
GGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGAGGAGTTTA
GCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTGGTGGAAGC
AATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTTCCGGGATG
CAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTCGAAGAACG
GTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTCACTGCGGC
AAGAGTTACAAAACGGCCCCATGGCCTGAAGAACCACGCGCTGCACACAC
ACAACTCTCAACCAGATAGTGTGCTGAATGCCCAACTGGCCAATGCGTTG
GCCATATGCGATGGGGCCAGTGCGGCCACGCCTGTGGGGCAGCACAACAC
CTCCTTCAAATCCAAACCGCCGCCCATCATTCATCGCACCACTCGCCGTC
CTCAGTCCCTGGGCTCGTTGAGCCGTCGAGCATCTCAACATGTCGAGCAG
CGGCAGTAATTGCCATGTAAGCATCGGCAGTCTGTCGACGGGAATTAATG
GCACCATGGAGAGCTCTATCACCAACTCTGCCATTTCTACCTAGCAACGG
GAATGTCTTGCACACACCTCCAGTGCCGGAATGTTGGTCATCTGATCAGT
CTTTCCCTTGAAACAAGTTC
FMO06178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12054-RF | 2408 | CG12054-RF | 595..1624 | 9..1040 | 4285 | 95.3 | Plus |
| CG12054-RE | 4280 | CG12054-RE | 595..1624 | 9..1040 | 4285 | 95.3 | Plus |
| CG12054-RA | 3130 | CG12054-RA | 595..1624 | 9..1040 | 4285 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31225811..31226077 | 107..373 | 1305 | 99.3 | Plus |
| 3R | 32079331 | 3R | 31226565..31226959 | 618..1012 | 1045 | 87.7 | Plus |
| 3R | 32079331 | 3R | 31226364..31226503 | 480..619 | 700 | 100 | Plus |
| 3R | 32079331 | 3R | 31226139..31226250 | 371..482 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 31221366..31221465 | 9..108 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:23 has no hits.
FMO06178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:44 Download gff for
FMO06178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12054-RA | 595..1489 | 9..902 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:41 Download gff for
FMO06178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12054-RA | 593..1487 | 9..902 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:20 Download gff for
FMO06178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12054-RA | 595..1489 | 9..902 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:20 Download gff for
FMO06178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31221366..31221465 | 9..108 | 100 | -> | Plus |
| 3R | 31225813..31226076 | 109..372 | 99 | -> | Plus |
| 3R | 31226141..31226249 | 373..481 | 100 | -> | Plus |
| 3R | 31226366..31226503 | 482..619 | 100 | -> | Plus |
| 3R | 31226567..31226850 | 620..902 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:44 Download gff for
FMO06178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27047088..27047187 | 9..108 | 100 | -> | Plus |
| arm_3R | 27051535..27051798 | 109..372 | 99 | -> | Plus |
| arm_3R | 27051863..27051971 | 373..481 | 100 | -> | Plus |
| arm_3R | 27052088..27052225 | 482..619 | 100 | -> | Plus |
| arm_3R | 27052289..27052572 | 620..902 | 92 | == | Plus |
