FMO06179.5prime Sequence
1164 bp (1002 high quality bases) assembled on 2008-09-15
> FMO06179.5prime
CAGTCGACATGAACGAGACCTTAAAGCTGTCCGGACTCGGAATGCAGCGC
ACCAATATCGAGCTCGAGCGGCAGAGGCACCTGGCCAACTGGCTGATGAA
CAGTAGACCGCACATGCCCGGCGGACCAGCAGCAGCAACAACAACATCAG
CGGCAGCAGCAACAACACCCACTGCATCAGCCACAAAGGGCGCAACAACA
ACAACAGCTACAACTACAAATCCTGGCTCCACAGTGGGTGGAGCAGGCGC
TGGCCCAGTGGGCGGCAACGGGGTCGCAACAGCAGCAGCAGCGGGCGCAC
CCAGCAACAGCGTCGCAGCTGCAGCAGCAGCTGCATGTAACGGTGGAGCA
GCCGTTGGCGCCCATCACGGCCACCATTCGGCGGCTGGGGCGCGCAAGCC
CAAACTGCGGCGCTTCAACTCCCACGACACCAGTTCGAATATGTTCTCGG
TGGCCGATTTCGAGAACGCCCGCCTAGCTCGCCGCAACGAGATCGAGCTG
AACCAGCGGAGGGCACGACGCGTGCGCGGCAGTGCCAACAACAGCACCTA
CGGCCTGGGATCGGGCTCAGGATTGCTGGGAGGTGCCCATTCTGGATACT
GTGACGCACTCAATGGCAGCGGCGATTACTCCACCGGGGACAGCAAGGCC
TCCAAGGGCAGCAGCGAAGGTGCGCTGACAGCCATTGAGTTCCTTGAGCG
GAATTCCCTGCCACGAGTCGTCCCGCATTCTGCATGCGAGCAAGAGCTCA
AACGAAACGCTGCAGTCCAGCTCATCGCATGGCTCCTCCACGGCGGCATC
GAGCTGCTCCTCCGACGGGAGCGAATCCGTTTGGTTCTGGTGGCAGTGGT
GGTGGAAACATTTCCAGTGGCAACATTGACACCGGCCACCCATTCATCGT
TCAGCGGAAGGCAGCGCCACCGGAAACGGAACTGGCTCTGGTCCTGGTCT
TAGTTCGGGCTCGGGTTCTGGTTCTGGTTCTGGTCCACAGAACAACAACG
GTCGGCACAGCAGCAACGGGGCACTCCACCCGGCCACCGATGGAGCCTTT
TTCTGCCCAAAGGCTGGTGCGACAGGCGCAACATCTACCAGGGACCACGC
CAAAACTCTAGGACATGCCAACGCAAGAAAGACCTCTGGCTCTTCACGGG
AGCTTCCGGTTACT
FMO06179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B4-RC | 8094 | CG9239-RC | 891..2040 | 9..1164 | 5105 | 97.1 | Plus |
| B4-RB | 5743 | CG9239-RB | 572..1721 | 9..1164 | 5105 | 97.1 | Plus |
| B4-RA | 5920 | CG9239-RA | 749..1898 | 9..1164 | 5105 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13512958..13513293 | 344..9 | 1680 | 100 | Minus |
| 2L | 23513712 | 2L | 13509466..13509793 | 669..342 | 1640 | 100 | Minus |
| 2L | 23513712 | 2L | 13508684..13509104 | 1095..669 | 1530 | 95.3 | Minus |
| X | 23542271 | X | 13649985..13650039 | 127..181 | 185 | 89.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6944 | 125..331 | 321 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6945 | 128..353 | 320 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2516 | 127..339 | 283 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2673 | 128..349 | 277 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2554 | 49..340 | 264 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 125..335 | 259 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6917 | 125..292 | 256 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6917 | 154..352 | 250 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 123..218 | 246 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2494 | 45..218 | 238 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2476..2661 | 125..311 | 229 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2954 | 61..234 | 226 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6895 | 45..219 | 224 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6861 | 125..218 | 223 | 73.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6937 | 128..234 | 220 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 133..220 | 219 | 75.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2476 | 125..218 | 218 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2474 | 123..219 | 215 | 69.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1174 | 123..222 | 212 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1613 | 130..206 | 200 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2971 | 125..326 | 195 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..2849 | 125..354 | 184 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6923 | 125..202 | 183 | 70.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1163 | 123..178 | 172 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2982 | 127..311 | 170 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2997 | 127..214 | 162 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1135 | 131..219 | 161 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2500..2546 | 125..171 | 154 | 80.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 117..156 | 125..164 | 146 | 85 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11295..11334 | 125..164 | 146 | 85 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1600 | 125..172 | 145 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6877..6923 | 123..169 | 145 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2836 | 129..218 | 144 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2853 | 125..352 | 142 | 55.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6050..6094 | 121..164 | 141 | 82.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 50..213 | 27..185 | 139 | 60.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9080..9243 | 27..185 | 139 | 60.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..8018 | 132..205 | 135 | 66.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7505..7546 | 121..161 | 135 | 83.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9462 | 132..205 | 135 | 66.2 | Plus |
| BS | 5142 | BS BS 5142bp | 2015..2091 | 154..231 | 135 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2879..2966 | 135..225 | 132 | 63.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1022 | 131..183 | 130 | 71.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 910..942 | 130..162 | 129 | 87.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12088..12120 | 130..162 | 129 | 87.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7384..7458 | 109..181 | 127 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5619..5681 | 160..225 | 125 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6905..6999 | 127..218 | 125 | 62.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..196 | 131..207 | 123 | 65.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9226 | 131..207 | 123 | 65.4 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..586 | 134..233 | 121 | 59.2 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 137..214 | 120 | 61.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6598..6671 | 125..201 | 116 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8054..8127 | 125..201 | 116 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8870..8910 | 141..181 | 115 | 75.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7959..8020 | 125..183 | 114 | 67.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9403..9464 | 125..183 | 114 | 67.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 530..575 | 123..168 | 113 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1007..1163 | 7..154 | 112 | 58.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8621..8681 | 123..181 | 112 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2478 | 125..148 | 111 | 95.8 | Plus |
FMO06179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:57 Download gff for
FMO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 744..1847 | 5..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:42 Download gff for
FMO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RB | 567..1670 | 5..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:50 Download gff for
FMO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 744..1847 | 5..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:50 Download gff for
FMO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13508666..13509104 | 669..1112 | 95 | <- | Minus |
| 2L | 13509467..13509792 | 343..668 | 100 | <- | Minus |
| 2L | 13512960..13513298 | 5..342 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:57 Download gff for
FMO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13508666..13509104 | 669..1112 | 95 | <- | Minus |
| arm_2L | 13509467..13509792 | 343..668 | 100 | <- | Minus |
| arm_2L | 13512960..13513298 | 5..342 | 99 | | Minus |
