FMO06180.5prime Sequence
1105 bp (941 high quality bases) assembled on 2008-09-15
> FMO06180.5prime
ATAAAACGAAGTTATCAGTCGACATGGCCTGCTTTCCACGACTTTTCCAC
AATCGCAGCAAAAACAAATTCACGCCCGCCGAAGATGAGAACACCGATAC
GATACTCAACACACAAGATAGTAACGTGCAAATTGGCAAGTACATCCGTC
GCGAGGAGAAGCCACTGTACTCGCCCATCGTCACTCCGAGTGCCAGTGAG
GCCAAACTTCAGCGCCTCAGACAGCAACAGCAGCCGCCCGGCTCACCGCC
CGCACCCGCCAGGTGGACCCTGCACTCGGTTGCCGAAAATGGCAGCGCAA
ACAATGGCGTCCAGGAGCGGAAGTTCCGCACCAACAAGGACAAACTGCAG
GCGCAGGATGCATGCCCATCCGGCGGCAGTGCAATTAATGTCATACGCTC
AAGTTCGAAATTAAAACCAGTCAAAGAGCGACGGCCCACCGCCTTGCCCA
CCGAAGTGCCCAGCATCGAGATCGAGGATGTTCGGGATGCAAAGGACACT
GGAGATGGCATGGATTCACTGGGGGAGCGGGTGCAGCCGGGTGCTAATGC
ACATGTCGATGTCGTCGATGGCGGCGGCAAGTCAAAACTCAAAGTGAATG
TGAATGGCATAATTGATGAGAGCGTCGCCCACGACGATGACTATGACACA
CCCTCGAGCAACTCCATAGCCACAACACCTGTGACCGAGGGTCCTGTAAA
GTTTTTCATTGGTCACACGCAGAACTAAGCGCCCAGCAAACGGATGACAC
CTTGTCCTGCCAGAGTAGCGATGCCAACAACAACAGTGCCGCCAAACTGA
CAAATGGCGTCGTGCCACATGAGCAACCGGAACGGGAAATGGGCAAGCAG
CAAGCACTCCAGGCTCCGCCCCGCGCCAAGAGCTCCAGCAATGTGTCACT
CAATTATCTGGCCAAGTAGCCAGACGGACAGCCAGCGTCGTCGACGTGTG
TCCCCGATGCCCGAATATTAACAAACGCAGCACCGCCGTTGCGCCGAACT
CCTCGTCCCGAACTCGCTCATCTGCCTAGACCGGACATGGATGACGCGCA
GCGAGCAACTGACCACGCTCACAGAATCGCGATGCTCGATGTCAAGATCA
TGGCA
FMO06180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4839-RA | 6512 | CG4839-RA | 2310..3298 | 24..1009 | 4720 | 98.9 | Plus |
| CG4839-RB | 3982 | CG4839-RB | 677..1665 | 24..1009 | 4720 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10150730..10151524 | 199..992 | 3695 | 98.7 | Plus |
| 2L | 23513712 | 2L | 10147085..10147189 | 24..128 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 10150337..10150410 | 128..201 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:06 has no hits.
FMO06180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:06 Download gff for
FMO06180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4839-RB | 662..1678 | 11..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:44 Download gff for
FMO06180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4839-RA | 212..1228 | 11..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:13 Download gff for
FMO06180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4839-RB | 662..1678 | 11..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:13 Download gff for
FMO06180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10147070..10147189 | 11..128 | 95 | -> | Plus |
| 2L | 10150338..10150409 | 129..200 | 100 | -> | Plus |
| 2L | 10150732..10151556 | 201..1019 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:06 Download gff for
FMO06180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10147070..10147189 | 11..128 | 95 | -> | Plus |
| arm_2L | 10150338..10150409 | 129..200 | 100 | -> | Plus |
| arm_2L | 10150732..10151556 | 201..1019 | 98 | | Plus |
