FMO06182.5prime Sequence
1150 bp (924 high quality bases) assembled on 2008-09-15
> FMO06182.5prime
CAGTCGACATGGCTATGCAACGGGAAGCTGGAGTGCAGGACTTCGTCCTC
CTCGACCAAGTGTCCATGGAGAAGTTCATGGATAACCTGAGAAAGCGATT
CCAAAACGGATCCATCTACACATACATCGGCGAAGTGTGCGTCTCGATGA
ATCCCTACAGACAGATGAACATCTACGGTCCGGAAACCATTCGCAAGTAC
AAGGGTCGGGAGCTCTTCGAGAATGCCCCACATTTGTTCGCCATTGCCGA
TTCCGCCTACAGGGTGCTCAAGCAGCGCCAACAAGACACCTGCATCCTAA
TTTCCGGTGAGTCCGGTGCGGGCAAAACGGAGGCCTCCAAGATCATCATG
AAGTACATTGCGGCGGTGACCAATGCCCAGGGTCAGAACGAAATCGAGAG
AGTCAAGAACGTTTTGATCCAGAGCAATGCAATTCTGGAAACCTTCGGCA
ACGCAAAGACGAACCGCAACGACAACTCCAGCCGCTTCGGAAAGTACATG
GACATCGAGTTCGACTATAAGGCGGATCCCGTGGGTGGCATCATCACCAA
CTATCTGCTCGAGAAGTCGCGCGTGGTGCAGCAGCAGCCCGGCGAGCGGA
ACTTCCATAGTTTCTATCAGCTGCTGCGTGGTGCCAACGACAACGAGCTG
CGGCAATATGAACTGCAGAAGGAAACGGGCAAGTACCACTACTTGAACCA
GGGCAGCATGGACATACTGACGGAGAAGTCCGACTACAAGGGCACCTGCA
ACGCCTTCAAGACCCTGGGCTTCTCCACGGATGAGGTGCAGACCATTTGG
CGCACAATTGCCCGCTGTCTTGCATCTGGGAAATGTGGAGTTCCAACCAT
TGAGGATGAGCTGGTGATCAGCAATAACAGCACTTGAAATCCACGGCCAG
CTGCTCCAGTCACCGAAACCGAGCTTGTCATGGCTCTGACCAATCGGGTC
ATGCGGCGGTGGCATGTAATGCAGAACGATCACCAACGCCCCGCAGCAGA
AGTACGAAAGGATGCTCTGGCCAAGCCATCTTACGAACCGTACTCTTCCC
TGGAATCATCTCCCGCATCAACAGACATCTAATGCCAGGAAAGCAAGAAG
CCACGCCAATTAACTCGGTCACTCGAAGTGCCTGACTTTACCCGCCTCCC
FMO06182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo31DF-RC | 3882 | CG7438-RC | 329..1399 | 8..1074 | 4670 | 96.8 | Plus |
| Myo31DF-RB | 4318 | CG7438-RB | 765..1835 | 8..1074 | 4670 | 96.8 | Plus |
| Myo31DF-RA | 3741 | CG7438-RA | 188..1258 | 8..1074 | 4670 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10497853..10498156 | 400..97 | 1490 | 99.3 | Minus |
| 2L | 23513712 | 2L | 10496629..10496850 | 620..399 | 1065 | 98.6 | Minus |
| 2L | 23513712 | 2L | 10494880..10495106 | 846..619 | 1045 | 98.2 | Minus |
| 2L | 23513712 | 2L | 10505926..10506015 | 97..8 | 450 | 100 | Minus |
| 2L | 23513712 | 2L | 10494580..10494811 | 1074..847 | 330 | 86 | Minus |
| 3L | 28110227 | 3L | 1326552..1326709 | 421..578 | 280 | 78.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:26 has no hits.
FMO06182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:25 Download gff for
FMO06182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo31DF-RA | 185..1319 | 1..1134 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:01 Download gff for
FMO06182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo31DF-RB | 763..1897 | 1..1134 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:40 Download gff for
FMO06182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo31DF-RA | 185..1319 | 1..1134 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:40 Download gff for
FMO06182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10494879..10495104 | 621..846 | 97 | <- | Minus |
| 2L | 10496629..10496848 | 401..620 | 98 | <- | Minus |
| 2L | 10497853..10498155 | 98..400 | 99 | <- | Minus |
| 2L | 10505926..10506018 | 1..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:25 Download gff for
FMO06182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10494879..10495104 | 621..846 | 97 | <- | Minus |
| arm_2L | 10496629..10496848 | 401..620 | 98 | <- | Minus |
| arm_2L | 10497853..10498155 | 98..400 | 99 | <- | Minus |
| arm_2L | 10505926..10506018 | 1..97 | 95 | | Minus |
