FMO06183.5prime Sequence
1141 bp (943 high quality bases) assembled on 2008-09-15
> FMO06183.5prime
CAGTCGACATGTTCGATATCAAGACGCCCAAGCGCACCTACTACCTGGCT
GCTGAGACGGAGGCGGATATGCGCGACTGGGTGAACTGCATCTGCCAGGT
GTGTCACCTACACGACACAAAGCAATCGAATGAGTTGCCATTAGGAGCTG
TGGGTGCAGACGAAAACCGCACCCAACACACGAGCTCCAGTGGCGGTCTA
AGCAACTCCACTCAAAATACGACCACCACATCGTTGCACTCGTCGGCCGG
AACCACAGCGCCTCAGGCTTCGGTCCCAAATGCTGGAGGATCTGCCCAGC
TGCGACGACCGGCGGTCATTGAAGAGCAACCGATGCCCTCGAATGCCGGC
AACAATAACTCAGACTCGGTGTATGTCAACACGGAGTACAGCAATCGCGA
GACGATGCTCTGCGATGCCAATTTCGATCAGCAGGAACTGCTCTCGGCTG
CCCAGCAGCAACCGCCTCCATCGCCGGCCACGGCTCTTTATCTAAACCAC
AGTGCTTTGATCCAAGCTCAGGCGGCAGCTGCAGCCGCCGAGCAACTGCA
GCAGCAGCAGCAACAAGCTGCTCGCTTGGCGGTCAGTGCCAACGGAGTAG
TGCGCAAATTGCCGGAGCATCTGGTGCTCACGCAGCAGACCCTGGCGGAG
GCAGCTGCCCAGCAACACAGCAGCGTACAGGCTTCACCCGCTTTGAGCAC
CGCATCCGGACCGTACATACCCATCAGCGAGTGCTTCTCGGGCAGCCCGA
GATTCCTGCCCGGCGTTCCACTGCCCGGCGCAGATTTGGCCATACCAAAC
AAACCCCACCACGCCGTTGAAACAACGTGTATCCCAAGTTCTACGATACG
CCGCGTAGTCATAATAACATAGGTCTAAATCTGACAAACGATCAATCCTA
CTCCACCGAAGATACCAATTTGAGTCTGCACATTGGGCCAATAAACAATG
CTAAGTAAACAACGCTCCGACTCCGATTCTGAAAGCGTTTTCACCGATGA
CGATGAGTGGGCTCATCCCTTGGCCACTGCCCGAGAATGTGGAATCGCAG
TACCGGACCTTCGGAATGGTTCCATGGAAAAAGAAATCATTCGTGCTAGC
GTACTCGCATCGAATTCTCTAAAATGCCGGAGAGGAGGAGG
FMO06183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dos-RA | 3254 | CG1044-RA | 312..1439 | 7..1140 | 5125 | 97.5 | Plus |
| dos-RB | 4666 | CG1044-RB | 1724..2851 | 7..1140 | 5125 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2592550..2593319 | 157..928 | 3620 | 99.1 | Plus |
| 3L | 28110227 | 3L | 2592334..2592486 | 7..159 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 2593412..2593499 | 954..1042 | 350 | 95.5 | Plus |
| 3L | 28110227 | 3L | 2593561..2593646 | 1044..1132 | 190 | 88.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6513..6861 | 200..565 | 119 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2366 | 515..566 | 118 | 71.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3307 | 542..565 | 111 | 95.8 | Plus |
FMO06183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:31 Download gff for
FMO06183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 1720..2849 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:31 Download gff for
FMO06183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RA | 320..1449 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:54 Download gff for
FMO06183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 1720..2849 | 1..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:54 Download gff for
FMO06183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2592330..2592486 | 1..159 | 98 | -> | Plus |
| 3L | 2592553..2593319 | 160..928 | 99 | -> | Plus |
| 3L | 2593388..2593499 | 929..1043 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:31 Download gff for
FMO06183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2592330..2592486 | 1..159 | 98 | -> | Plus |
| arm_3L | 2592553..2593319 | 160..928 | 99 | -> | Plus |
| arm_3L | 2593388..2593499 | 929..1043 | 91 | -> | Plus |
