FMO06184.5prime Sequence
1133 bp (991 high quality bases) assembled on 2008-09-15
> FMO06184.5prime
CAGTCGACATGACCCTCTTGCCAGACATCAAGGCATCGGATGCCGCTTGC
TGCGTGGGAGGTGCGAACAGCGATGCCAGCAGCAGTTCCGGCGTCTGCAG
CCTCAAGGGTCACCATGGTGACCCCGACAGCGGTTGCCTGGGCATCAACT
GTTGCACCACGGCGGCCAGCTCGGAGCTGTCCATCGACGAGACGTCATCG
ACCTCGTCCCGAGGCTCCTGCGAGCTGACCAGCAAGGTGACCAACGACCT
GAACGGATTCCAGAGTCCGAACTACCACCAGGCGGTGGCGCATGCCAACT
TCGACCACTGCGATCCCGTGGACATCCAGTTCGCCGACGTGCGCTACACA
GTGAAAAAGTTCTCCTTCCCGGAGCGGAAGTTCGTCACCAAGGAGATCCT
TCATGGCCTGAACGGCAGCTTCCGGTCTGGCGAACTCACAGCCATCATGG
GTCCTTCGGGCGCCGGCAAGAGCACGCTGCTGAATGTGATGTCCGGATTT
TGCTCCACTGGCGTGTCGGGCGATATCCGGGTTAATAGAAAGCCCATGGC
TCCCAGCTCCGAGAGGTTTCGCCAAATGCTGTGCTACATCCACCAGGACG
ATCTGCTGCGTCCACAGCTGTTGGTCGGCGAGATAATGCTGCTGGCGGCA
CATCTGAAGCTGGGCTTCAAGGTCACCAAGGCGTACAAAATGGATCTGAT
CAAACACATCTTATCGCTGCTGGGTCTGGACCATCGCTACAATGTGCCCA
CTGGGAAGCTTTCGGGTGGCCAGAAGAAAGCGACTCGCAATCGCCCTGGA
GCTGATAAGTAATCCCTCCCGTGCTATATCTGGATGAGCCCGACGACTGG
CCTGACAAGCTCCTCGTGCACCTCCTGCGTGGCTCTGCTGAAGAAACTGG
CGTCGCAGGCCACACGAATAGTCTGCACCATCCATCAGCCGAGTGCCCTG
ATCTCAGATGTTCGACCAGCTCTACACGTCTTCGATGGCCACTGCATGTA
CAGGACCTGTGCCCGACTGGTGCCCTTCTTGACCGACAGCACCTCGTCTG
CCCGAGTTACCACACCTAGCTGACTATCTACTGAAGGGCCTGGGGGCCAG
CCATCACGTGACCTGATGACCTATTCCATGCCG
FMO06184.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17646-RA | 3421 | CG17646-RA | 593..1724 | 7..1131 | 4850 | 96.2 | Plus |
| CG17646-RB | 2999 | CG17646-RB | 171..1302 | 7..1131 | 4850 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1741699..1742076 | 7..384 | 1815 | 98.7 | Plus |
| 2L | 23513712 | 2L | 1743344..1743540 | 502..698 | 955 | 99 | Plus |
| 2L | 23513712 | 2L | 1743633..1743773 | 698..840 | 600 | 97.9 | Plus |
| 2L | 23513712 | 2L | 1742142..1742260 | 384..502 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 1744923..1745161 | 848..1078 | 560 | 90 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:26 has no hits.
FMO06184.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:53 Download gff for
FMO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17646-RB | 163..1271 | 1..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:32 Download gff for
FMO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17646-RA | 583..1691 | 1..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:42 Download gff for
FMO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17646-RB | 163..1271 | 1..1101 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:42 Download gff for
FMO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1741691..1742076 | 1..384 | 97 | -> | Plus |
| 2L | 1742143..1742260 | 385..502 | 100 | -> | Plus |
| 2L | 1743345..1743540 | 503..698 | 98 | -> | Plus |
| 2L | 1743634..1743779 | 699..847 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:53 Download gff for
FMO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1741691..1742076 | 1..384 | 97 | -> | Plus |
| arm_2L | 1742143..1742260 | 385..502 | 100 | -> | Plus |
| arm_2L | 1743345..1743540 | 503..698 | 98 | -> | Plus |
| arm_2L | 1743634..1743779 | 699..847 | 97 | -> | Plus |
