FMO06186.5prime Sequence
1154 bp (1033 high quality bases) assembled on 2008-09-15
> FMO06186.5prime
CAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGCGGATAGTT
TGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTTGCTTTGGC
CCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAGGTGGCGCA
ATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGCTGCTGCTC
AAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAACGTTCGGA
AAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGAACA
ATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAAAGCCGCTG
GGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTGCTAAAGCA
AAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAAAAAAAGTT
TCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCGTCAAGGGA
ATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATGGGAGCACC
GGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAATAATGTAG
CACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGCTGGACATG
ACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTACAATGACTT
CTACAACAAATAAACAGCAGCAGTAATCAGCATATATACAGCCAGCTGAG
CAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGTACTACA
ACAATAATAACAATATTGTTAATAACAATAACAACTCACCGGAGCTGTAC
AAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACCACCATA
TCGTGACCCCGCCACCCCCGAAAAAACAGCCCCATGTGCAGGGGCAGCGT
TTGGCCAGCAACAATGCGGACACATGTCCAATGCTTCTCCTCGACGAATC
GGTTTCTCAGCGACTACGATCAGCATAGCAGCCACCAACACTAATAGCAT
CAACATAATAGCAGGCCATGGAGGAGGGTGGAGCCATGTCCGACACGCCA
GTATACCGATTTGCTGCACTCATCAGTTCCACGGTGACAGATCCAGGCCC
AGCA
FMO06186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RASSF8-RA | 3429 | CG5053-RA | 621..1740 | 9..1125 | 5135 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25663144..25663775 | 449..1080 | 2630 | 97.5 | Plus |
| 3R | 32079331 | 3R | 25662631..25663008 | 78..455 | 1890 | 100 | Plus |
| 3R | 32079331 | 3R | 25662415..25662487 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 790..834 | 128 | 78.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 790..834 | 128 | 78.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 32..68 | 798..834 | 122 | 81.1 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7070..7106 | 798..834 | 122 | 81.1 | Plus |
FMO06186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:08 Download gff for
FMO06186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RASSF8-RA | 613..1753 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:49 Download gff for
FMO06186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5053-RA | 608..1748 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:15 Download gff for
FMO06186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RASSF8-RA | 613..1753 | 1..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:15 Download gff for
FMO06186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25662407..25662486 | 1..80 | 95 | -> | Plus |
| 3R | 25662634..25663007 | 81..454 | 100 | -> | Plus |
| 3R | 25663150..25663836 | 455..1137 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:08 Download gff for
FMO06186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21488129..21488208 | 1..80 | 95 | -> | Plus |
| arm_3R | 21488356..21488729 | 81..454 | 100 | -> | Plus |
| arm_3R | 21488872..21489558 | 455..1137 | 96 | | Plus |
