FMO06187.5prime Sequence
1125 bp (907 high quality bases) assembled on 2008-09-15
> FMO06187.5prime
CAGTCGACATGAGCACGCCCAGGGTGTCTCCCAAGCATCAGCAGAGTGGT
AAGGAAGTAGCCGCCACCACGACAGGGATTCCTAGTGCCGCATCCTCCGC
GCAGAGCTCTGGTGTTGGCTCGATGGTTTTGCAGGAACCAGATGTGATAG
CAAGCACAAAGCTTGCCCAGTCTAAAACTACTGATTCCATCACCTCGTCG
GGACCCGTGGCGCCACCGCGAAGAAAGAAGAAGTCTCGTAATTGCTCCAT
CAGTTCCTCAGATCAGTATAGTCTTCCTCCTGCGGACAACGAAGACACTG
ATAGTGATACGCGGTCTGTGAAGAGTGTGCAGGGTCTTCAGCAAAAGCTG
CGGGATGACTTTGTCATGGAGTTCGAGAGCTCTCTTAACAATGCAACTAG
TTCAGCCTCCAATATCACCCTGACCTGCTCCTCCACCAATACAGTTGTTT
CTGCATCGGCTTCGACTTCGGCAGCATCTTCGTCCTTGCCATCAACAATT
GCAATTCATATGCGCCCCATGGTCGCTTCGGTCACCATTGCTGGTCCAAA
ACTCACTCAATCTCTGGGCAGCAGTTCCACGTCGGTCCACTCCAAGCCAA
GTCCATCAAATTCAGCGAAAAGCAATTCCGCACCAGCGAGGGTTAGTTCC
ATTGATCCGAATCAGGGTCTGAATCTGTTTAAGGCCATCCAGGGAGGTTA
TGTGGTGAAACCACGCGACGAGGCCAGCAACAAGGCGCAAGGCCCATCCC
AAGATGAAAATCGAGCGCATTGAGAAAATGCTGATGGAAAGCGCGAACCG
ACCAAAGCTGGCGGGAAACGGGATCCAACAGTTTGGAAGCTCTACACGCT
ATCCCGGATTTTTATCGCGGTGTTACGATAAGGAGCGCCCGAAGTCCGCT
GGCGACGAAATGTGCTTCAACAGATGAAATTTATGTGCGCACGCGAACCA
GCTCAGCAAGCAGCTAACCGACTTTGAAATCTTTGAACAAGTTCCTGTTT
AAAAATTTAACACGGAGAAATATGCCTCTATCCGAATGCGTTCCCACCAG
TGCCTGAGGATGAATCCGCTCTCGCTCACATTCTTAGCCTGACCTCCCCC
TGGAAGTGTATCCAGAAGGATTCCG
FMO06187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34133-RC | 4263 | CG34133-RC | 1004..2129 | 9..1125 | 5015 | 97.3 | Plus |
| CG34133-RB | 3831 | CG34133-RB | 914..2039 | 9..1125 | 5015 | 97.3 | Plus |
| CG34133-RE | 4209 | CG34133-RE | 1004..1952 | 9..956 | 4525 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29871586..29872223 | 9..646 | 3175 | 99.8 | Plus |
| 3R | 32079331 | 3R | 29872281..29872488 | 644..852 | 885 | 98.1 | Plus |
| 3R | 32079331 | 3R | 29872540..29872827 | 848..1125 | 555 | 87.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:17 has no hits.
FMO06187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:53 Download gff for
FMO06187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RB | 910..2039 | 5..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:50 Download gff for
FMO06187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RB | 905..2034 | 5..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:53 Download gff for
FMO06187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RB | 910..2039 | 5..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:53 Download gff for
FMO06187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29871582..29872223 | 5..646 | 99 | -> | Plus |
| 3R | 29872284..29872484 | 647..848 | 98 | -> | Plus |
| 3R | 29872541..29872827 | 849..1125 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:53 Download gff for
FMO06187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25698006..25698206 | 647..848 | 98 | -> | Plus |
| arm_3R | 25697304..25697945 | 5..646 | 99 | -> | Plus |
| arm_3R | 25698263..25698549 | 849..1125 | 91 | | Plus |
