FMO06189.5prime Sequence
762 bp (762 high quality bases) assembled on 2008-09-15
> FMO06189.5prime
CAGTCGACATGAGCCCGCCCATCGTCACGCGACGGAGTGCGCAGCAGGCA
AAGATTCAGACACGGGCAATGGCCAGTAAATCGAAGACGGGCACGACAGG
GGCGGCGACGGCGGCCGGCGGCACCGGCAGCAGCAGCGGCAGTATCAGCG
GCGGATTTAATGCCGCCGATCCGCGAAAGTCGAACAAACCGAACGCAGCG
CTCTTGGAGGCGAAACGTCGAGCTCGGAACAACATGCTCAAGAATCAGGG
CTGCGGATCGCAGGAGAGCGTCACGGATATATTCCAGAATGCTGTCAACA
GCAAGAGTCTGGTGCGGAAACCAACGGCACTGATCTACGATGAGTCCATG
AGCCAGCACTGTTGCCTGTGGGACAAGGAGCACTACGAGTGTCCCGAGCG
CTTCACACGAGTCCTGGAACGCTGTCGCGAACTAAATCTGACGGAGCGCT
GCCTGGAGTTGCCCTCGAGATCGGCGACCAAGGATGAAATTCTGCGCCTG
CACACAGAGGAGCACTTCGAGCGGCTGAAGGAGACGTCCGGGATTCGCGA
TGACGAGCGCATGGAGGAGCTGAGCTCCCGCTACGATTCAATTTACATTC
ATCCGTCCACATTCGAGCTCTCCCTGCTGGCCAGCGGCTCCACCATCGAA
TTGGTGGACCATCTGGTCGCCGGAAAGGCGCAGAATGGCATGGCCATCAT
CCGGCCACCGGGTCACCATGCGATGAAGGCCGAGTACAACGGGTTATTGC
TTCTTCAACAAC
FMO06189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HDAC6-RG | 4483 | CG6170-RG | 750..1504 | 7..762 | 3755 | 99.9 | Plus |
| HDAC6-RA | 4483 | CG6170-RA | 750..1504 | 7..762 | 3755 | 99.9 | Plus |
| HDAC6-RF | 3272 | CG6170-RF | 109..859 | 11..762 | 3735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15334989..15335269 | 11..291 | 1405 | 100 | Plus |
| X | 23542271 | X | 15335545..15335729 | 421..605 | 925 | 100 | Plus |
| X | 23542271 | X | 15336289..15336445 | 605..762 | 740 | 99.4 | Plus |
| X | 23542271 | X | 15335350..15335480 | 291..421 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:06 has no hits.
FMO06189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:36 Download gff for
FMO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 745..1504 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:54 Download gff for
FMO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 1100..1859 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:55 Download gff for
FMO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 745..1504 | 1..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:55 Download gff for
FMO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15334981..15335268 | 1..290 | 98 | -> | Plus |
| X | 15335350..15335480 | 291..421 | 100 | -> | Plus |
| X | 15335546..15335729 | 422..605 | 100 | -> | Plus |
| X | 15336290..15336445 | 606..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:36 Download gff for
FMO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15229014..15229301 | 1..290 | 98 | -> | Plus |
| arm_X | 15229383..15229513 | 291..421 | 100 | -> | Plus |
| arm_X | 15229579..15229762 | 422..605 | 100 | -> | Plus |
| arm_X | 15230323..15230478 | 606..762 | 99 | | Plus |
