FMO06190.5prime Sequence
1173 bp (997 high quality bases) assembled on 2008-09-15
> FMO06190.5prime
CAGTCGACATGCGGCCACCAATGGCGATGCCATCGATGCAAGCGTCGACG
GGTTTGCAGCCGACTGAAGTGCATCCGGTGCAACAGCTGCACTTGCATGC
CACGCCCTCAAATCCTTCGGATATACACCAGGATCGGAGTCCACACAACC
ATAACGCCAAACTGCCACCGCTGGAACTGCTGGTGGAGAACAAGATTAGC
TACAGCAGCTACCAGCAGCACGCCAAGGACCTCAAGCACCAGAGTCACAA
TCAAAACCGATCCAAGAGAAGTTCCCTCAGCAGTCCCTCGTCCAGCGAGG
ATTGCGTTAGTGCTGCCAGGGCCAATATCTTTGATGACGCCGCCGAGAAC
TTCGTGATCAATTTCCCCTCGGAGTCGGCCACCTCGCAGCATTTGCTGCC
ACTGTCGGAGACTGTGCCCCTGCTCACCCACATCGAGGCCACGGTGGTGG
ATAAGCAGCGCTCCATAAGGCTGAACAAGAACAGTGCCTCGCTGATCTTC
ACGAAGAAGGAACTTAACCAGGGAACCAGGGAACATCATCATCAGCACAA
TAATCAGCAGCACCAGCAGCAGCAACGGCGTCCGCACCATAGCAGTTTGT
ACGGAGTGGGCAGGAAGCCGACCAAGCACCTACCGCCAACTAGAGGACAC
CACCAGAGGCGCAGTCTACCTCTTAGCTACAACAACAATCTGGTGACCAC
CGCTCCATCAGCAGGTGGGGCAGGAGGTCCCGGTGGGAGCAGCCAAACTT
GTGCCGCTCAAGCAGCAGCATCAGCACCACGGAGCGGGCCACACGGCACC
ACCCACGGCGAACGTCGTTGTTGCCGGTTGGAGCGGGAGCGGCGGCTCCG
TCTGCCCGCAAGCAGCTCTCCTAACTCCTGGTACGCGCCCGTCTACAGTG
CGCTCGGAGGAGGAGCTGGAGCAGGACTCGCGGGACTCCTCGCCAATTCA
CAATCTGGCAAACACAAAAGCAGCACCAGCGGTCCGCCAGCCAAAAGGCA
TCCACGGCCTGCATGCCCGGCCCCGCCAGATCGCGCCCACGATTCCCCGA
CGCCGAGACGGTTGCCTGCTGGACCGCAGACCGCACAAGGATCATATTTC
TCGGCAATGGGTGACCCTGGCGGACGGTCAGGATTGATTCGTGAAGCCGT
GCGAAGATCTGGAACGCGGATAC
FMO06190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-RB | 5061 | CG33144-RB | 878..1996 | 9..1124 | 5115 | 98 | Plus |
| CG33144-RA | 4539 | CG33144-RA | 698..1816 | 9..1124 | 5115 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10756529..10757450 | 934..9 | 4430 | 99.6 | Minus |
| 2R | 25286936 | 2R | 10756269..10756408 | 1065..928 | 415 | 92.9 | Minus |
Blast to na_te.dros performed 2014-11-28 19:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6822 | 503..589 | 164 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2512 | 532..722 | 158 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6895 | 516..688 | 156 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2613 | 532..778 | 147 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6913 | 532..726 | 146 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6824 | 532..579 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2470..2534 | 532..595 | 132 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2668 | 493..597 | 132 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6944 | 553..769 | 131 | 57.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1047..1161 | 480..589 | 131 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1582 | 532..589 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6855 | 532..589 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2488..2557 | 532..602 | 127 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1113 | 541..594 | 119 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 532..576 | 116 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2869 | 503..589 | 111 | 58.6 | Plus |
FMO06190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:00 Download gff for
FMO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 694..1807 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:55 Download gff for
FMO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 670..1783 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:56 Download gff for
FMO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 694..1807 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:56 Download gff for
FMO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10756530..10757454 | 1..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:00 Download gff for
FMO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6644035..6644959 | 1..933 | 99 | | Minus |
