FMO06191.5prime Sequence
1144 bp (1010 high quality bases) assembled on 2008-09-15
> FMO06191.5prime
CAGTCGACATGATGCGACTACCGGGAATGCCCATGCTACCAGGTGCGCAG
TTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCAAACGCTGATGCA
CTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGCCGGAACTGGTGG
AGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCCGTGCCCGCCCAG
CTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTTGCCACCCTGGTT
GGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACTTCAAGGAGAACC
TGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAGGTGAAGATCTTC
TTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCCGAAAGTGGAGAA
CTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGCGCATCCCAAAAG
CTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGACCTGAACGTGGAC
ACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAGCGGATGTGACGT
CTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCGTGCCTGAGGCCC
AGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAGCGATCAGGCTTG
AAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAAAAAACATGCGTT
TGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGTTTCAGGGATATT
GGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTTGAAGTCTGCTAC
TACCTGGCCGATGACACAATTGACATAAAGGAGAAATTTCCACGAATTCT
GGGCGAGGACGTCCCACGACTTTTCTAAAACGAGGCAAGTTGCCAAAGGA
GTTTCTGGTCTTCCTTGGCCTGGGCAACAACGGCCATGACGTTGCTTATG
TGCTGGGAAACAGTATGGCGCGATGGTGCGTACGTAACCGACCCGGTGAC
ACTGGTCAAAAGAGGTCCAACATTACACCGATCAGGATCTGCATAGGCGC
ATGCTAAATGGTTTTGGGAGGGGGGTCGTACTACAGCTGCATCAGGTCCC
ACCGAGAGCTAACTACGAGGAAGGTACGGCATCCAGGCATCAGC
FMO06191.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.2-RA | 2572 | CG11048-RA | 172..1309 | 9..1137 | 5050 | 97.1 | Plus |
| Efhc1.1-RA | 2559 | CG8959-RA | 300..599 | 238..537 | 300 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20240212..20240765 | 60..613 | 2770 | 100 | Plus |
| 2R | 25286936 | 2R | 20240886..20241363 | 613..1082 | 1720 | 95 | Plus |
| X | 23542271 | X | 15783054..15783353 | 537..238 | 300 | 73.3 | Minus |
| 2R | 25286936 | 2R | 20240107..20240157 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:35 has no hits.
FMO06191.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:48 Download gff for
FMO06191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 164..1242 | 1..1071 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:57 Download gff for
FMO06191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-RA | 113..1191 | 1..1071 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:27 Download gff for
FMO06191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 164..1242 | 1..1071 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:27 Download gff for
FMO06191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20240099..20240157 | 1..59 | 93 | -> | Plus |
| 2R | 20240212..20240765 | 60..613 | 100 | -> | Plus |
| 2R | 20240887..20241352 | 614..1071 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:48 Download gff for
FMO06191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16127604..16127662 | 1..59 | 93 | -> | Plus |
| arm_2R | 16127717..16128270 | 60..613 | 100 | -> | Plus |
| arm_2R | 16128392..16128857 | 614..1071 | 95 | == | Plus |
