FMO06192.5prime Sequence
1127 bp (1003 high quality bases) assembled on 2008-09-15
> FMO06192.5prime
CAGTCGACATGCAGCAAAAACCCCGAAACAACGGCTATCCGGGCACCCTC
ATCTGCGCGGTCCTCCTCGTCCTGCTGTCCACCGGTGTCAGCGGCCAGAA
GCAGTATTCCAAGGCAAGAAAGTTGGAACTGAGGGAGGATGTGCGGCGCA
TGTTCCAGCACGCCTACGATGGTTACCTGCGCCACGCCTCCAACTACGAT
GAACTGCGTCCGCTGACCTGCGATGGCCACGACACCTGGGGCAGCTACTC
CTTGACACTGATCGACGCTCTGGACACGCTGGCCACCATGGGCAACTTCA
CGGAATTCCGCCGCGCGGCAAGACTGCTCGAGGAGAAGATGGATTTTGAC
AGGGACATCAACGTGTCCGTGTTCGAGACAAACATCCGCATCGTGGGCGG
GCTGCTGTCCGCGCATCTGCTCTCCAAGCGTGCTGGCGTAGAGCTAGAGC
CAGGATGGCCCTGCAAGGGACCTCTGCTGCGACTGGCGGAGGATGTGGCC
CGACGATTATTGCCAGCCTTCGTCACGAACACGGGTATGCCTTATGGCAC
GGTGAACCTGCGCTATGGCGTGCCCAAGGGCGAGACCTCTATAACCTGTA
CGGCGGGCGTGGGGACATTCCTCATCGAATTTGGTACCCTTAGCCGGTTG
ACCGGGAAAACCATCTACGAGGATGTTGCTATGAAGGCGGTACATGCTCT
ATGGGCATATCGCTCGCCCATTGGACTTTTTGGCAATCACATCGACGTGC
AGAGCGGTCGTTGGACCGCCCTCGACTCTGGTATCGGAGCAGGAGTGGAT
TCCCTTTTTGAATACCTAGTTAAGGCATCTGTCCTGCTCAATCGCCCAGA
ACTCTTGCAGTTATTCCATGACGCTCGCGCGGCCATTGATAAGTACATGC
GGACGAGACTGGTACGTGTGGGTAGCATGAACAAAGCCGCGTCACCCTTC
CCGTCTTTCAGTCCCTGGAGCGTTTTACCGGCATCCTGAGTCATTATTGG
CGACACGAGCCGCTTGCGCATCATTATCACGTACATTGGGATCTGAAGAA
GTACGCTTTCTGACAGGTTATACATGCTGCTGAAGCATCCCCGATTCGGA
GTGTACCCCTGCACGGACTATCGATTC
FMO06192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edem1-RD | 3935 | CG3810-RD | 361..1429 | 9..1066 | 4895 | 97.9 | Plus |
| Edem1-RE | 3883 | CG3810-RE | 361..1429 | 9..1066 | 4895 | 97.9 | Plus |
| Edem1-RA | 3670 | CG3810-RA | 503..1571 | 9..1066 | 4895 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1906555..1907436 | 1007..132 | 4010 | 98.5 | Minus |
| X | 23542271 | X | 1907494..1907619 | 134..9 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:15 has no hits.
FMO06192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:27 Download gff for
FMO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 493..1533 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:58 Download gff for
FMO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 493..1533 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:54 Download gff for
FMO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 493..1533 | 1..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:54 Download gff for
FMO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1906555..1907434 | 134..1007 | 98 | <- | Minus |
| X | 1907495..1907623 | 1..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:27 Download gff for
FMO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1800588..1801467 | 134..1007 | 98 | <- | Minus |
| arm_X | 1801528..1801656 | 1..133 | 96 | | Minus |
