FMO06193.5prime Sequence
1141 bp (1062 high quality bases) assembled on 2008-09-15
> FMO06193.5prime
CAGTCGACATGAAGGAATCGGGAAGTGTCAGCAAAAATCAGCCGCAGACC
TCAGAGGCCAGAGGCTCGATTATAACCTACAGTCCCAGCAAATTTCTGAC
TAGCGTTGGAACAGGCAGAACGACATACAGCACACATACACACACAACAA
CAGCAACGTCGGCGGCGACAACCGCAACAAAAACAAACAATTTACCAATG
GGCGGATCCAGTGCCGCTTATTATGTGGTAAAGGCTGGCTCCCTGGGCAG
CGCTGCCTCCATGTCGGGTTGCATCAAAGTCAGTTCTCCGCCAAAGGGGC
CGCCGATGGCTAAGTCGCCCGCCCTGGTCGTTACATCGCCCTGCACGCCA
ACAGAGAGTTCCAGTACCATTTCGGCCCCTAGTGAATCCTCCTTTAGCGA
GAAAATGGAGCACAGCTATATGCGAGATACGCCAGTGCGCAGCGATGTTC
ACAACGGCCTAACGCCCGCTAGGAACATTCTGGTCCGCCATCCGCCACAG
TGTCCCAGTTGCCACACATATCCGCCGCAGCACGAGGAGCTGTCAGAGAT
TCAGCAGGCCCATGTGCCGCCCTATGATGAGGTAGTCGCCAAGGAGGCAA
TGAATGAATGCGCTCGTATTGCAAAATACGTAAAGAACAACAATTCGGAT
GAGCAAGATTGGGTGGCGCGCGTTAATAAATTTAATTGGACGCCCATGCA
GGAGATGGTTTTCGAGAAGGTCTGCTCAATTCTGGACCAGGATCAGTTGG
CACGCTTGGCCAACGACAAACGTCAGCACGAGCCTATCCATCGTCGCATA
AGCTCGGACAAATCCGCGTCCAGGTTTCGCAAACTTCTAGCCAGCGTGGC
TTGGAGTCACGCATTACGCAGTGGATCCATGCTCTGCTCATGGAGCACTT
GTCGCCTTCGTATATGGCCTCTTATCTGGAAATTCTTCAGACTCTGAGAC
CAGTTGCCCACTTTAGTGGACAGATGCTGTTGGTAGCCCTTAATAATAGT
CAGACTGCTGGCACGGTGATGAAAAACGATGGGAACCAAATATCATGCCC
AGTCCGTCAGCTACGCATAACGCATCCATGGTGTGCTGCCCAACAGCGAC
ACTTGAACAGTCCGAACGCATGCAAATGTTACAGGCCATAT
FMO06193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd1-RG | 3804 | CG8233-RG | 295..1430 | 9..1124 | 5110 | 97.8 | Plus |
| Rcd1-RE | 3864 | CG8233-RE | 295..1430 | 9..1124 | 5110 | 97.8 | Plus |
| Rcd1-RH | 3795 | CG8233-RH | 295..1430 | 9..1124 | 5110 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14152064..14152414 | 359..9 | 1755 | 100 | Minus |
| 2R | 25286936 | 2R | 14151607..14151926 | 679..360 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 14151164..14151546 | 1051..680 | 1405 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:11 has no hits.
FMO06193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:18 Download gff for
FMO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RH | 295..1415 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:59 Download gff for
FMO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8233-RB | 270..1390 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:43 Download gff for
FMO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RH | 295..1415 | 9..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:43 Download gff for
FMO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14151097..14151546 | 680..1111 | 95 | <- | Minus |
| 2R | 14151607..14151926 | 360..679 | 100 | <- | Minus |
| 2R | 14152064..14152414 | 9..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:18 Download gff for
FMO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10039569..10039919 | 9..359 | 100 | | Minus |
| arm_2R | 10038602..10039051 | 680..1111 | 95 | <- | Minus |
| arm_2R | 10039112..10039431 | 360..679 | 100 | <- | Minus |
