FMO06195.5prime Sequence
1129 bp (996 high quality bases) assembled on 2008-09-15
> FMO06195.5prime
CAGTCGACATGGACTACCGCCAAATGAAGAACGACGCTTACGGCATTGGC
CAGCGGCGCGGAATGGGGAGCTCCAGCGGCGTTGGTGGTGGTGGAGGAGG
CGGCGGCGGCGGGATGTATTCCTCAAACTACGGCGGAGGCGGTAGCGGCG
CCAACTTCGGCGGAGGCGGCAATACCAGTGGCAGAGGAGGCTACGGTGGC
ACTTTCGGTGGCGGAGGCTACGGCGTCAACCGGAATACCAGCCCAGATGG
TGGCAACTTCAGTCGCGGCGGTGGCAACTACAGCAACAACAGCAACAGTG
GCGGCAACAACAGCTACCCACGTTCCGGAGACGGAGATCGGAGCGGTTTC
AATCCGAGCAGCAACCAGCGTTTCGGCGATAATTTCCAGGACAAATTTCG
TGGCGGGCCGTCCTCCAATTTCGGCCAAGCGAACAGGGGAGCATCCAATC
AGAGCAACGTAGCCCGCTTGCTGGAGGTGGAGAACCGTATGGACTGCAAT
CCAGATGTCAACTATCGAGGTCCCCAGCCGCAGGGAAGCGGCGATAGGTT
TTTCAACGATGAACCCAGAAATCAGGGATCATTCGGTAATTTCGTTCCCA
ACGATGGAGTGCCATTTGGCGGCAACAATGCTCCCTCTTTTGGTGGAAAC
AATGGACCCGCTTATGGGGGCAATAGTGGACCTTCCTTTGGAGGAAGCGA
TGTCCCTTTTGGTGGAAACAGTGGTCCTTCGTTTGGAGGAAACAATCAAC
GCAACTTCAACAATGACAATTTCCCAAACAGAGGTCCTAAACTATGATGA
CCAGCGTTCCGGTTTCAATGATTTCCTACGGACGCAGTGGAATCACGGCA
ACTTTGGGCCAGAACTCTGGAAACTTTGGGGAAACATAGGGATATAGGAA
ACTTTAACAACCGCGGACCGGCTGTCGGAAGATCCGGAGCCCAAGCTTTA
CCCGAACTCTGGTGCAACTTTGGCAGCAATATTCCCGGAGGCGCTTTAGC
ACCACTTTGGCAGACTCTGGAAACTTTGGGGACAACAATAGGGATATGAA
ACTTTAACACCGCGACGCCTGTCGAGATCCGAGCCAGGTTACGACTTGTG
TAACCTTGTCACATAATCGGAGCGCTAGC
FMO06195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-RB | 3637 | CG5787-RB | 324..1389 | 9..1064 | 4880 | 98 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 165..1230 | 9..1064 | 4880 | 98 | Plus |
| CG5787-RB | 3637 | CG5787-RB | 1322..1479 | 849..1001 | 485 | 89.9 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 1163..1320 | 849..1001 | 485 | 89.9 | Plus |
| CG5787-RB | 3637 | CG5787-RB | 1165..1230 | 1004..1064 | 215 | 92.4 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 1006..1071 | 1004..1064 | 215 | 92.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12711247..12712306 | 1059..9 | 4535 | 97.7 | Minus |
| 2L | 23513712 | 2L | 12711160..12711301 | 993..857 | 350 | 88 | Minus |
Blast to na_te.dros performed 2014-11-28 19:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6924 | 117..315 | 181 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6901 | 144..316 | 151 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6854 | 253..365 | 149 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2427 | 227..317 | 149 | 62.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1154 | 260..317 | 146 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6779 | 274..314 | 142 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6845 | 253..314 | 139 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2431 | 217..312 | 138 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2423 | 274..367 | 137 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1578 | 275..317 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2609..2649 | 274..314 | 133 | 80.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 97..191 | 220..314 | 131 | 66.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9127..9221 | 220..314 | 131 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6827 | 227..317 | 130 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2406 | 215..317 | 129 | 61.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1547..1595 | 273..321 | 128 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6758 | 281..314 | 125 | 85.3 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 2973..3020 | 207..257 | 122 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2358 | 275..314 | 119 | 77.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1130 | 236..314 | 119 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1106 | 281..314 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2630 | 122..316 | 113 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2349 | 275..314 | 110 | 75 | Plus |
FMO06195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:25 Download gff for
FMO06195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 156..1244 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:00 Download gff for
FMO06195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 154..1242 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:50 Download gff for
FMO06195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 156..1244 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:50 Download gff for
FMO06195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12711217..12712310 | 1..1087 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:25 Download gff for
FMO06195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12711217..12712310 | 1..1087 | 97 | | Minus |
