FMO06201.5prime Sequence
1119 bp (-60 high quality bases) assembled on 2008-09-15
> FMO06201.5prime
TTAAAGGAAGTTATCAGTCGACATGGCCTGGCGATTCAAGGCTTCCAAGT
ACAAAAATGCCGCACCCATTGTGCCCAAGGCGGAGGCATGCGTCCGCGAG
ATCTGCGTGGGCAGCTACCAGACGTACGGTAACAACATCGCCGCCTCCGG
CGCCTTCATGGCCTTCAACTGGGAGCACACCGGGTCCAGCGTCGCTGTCC
TCCCGCTGGACGACTGCGGCCGGAAGAGCAAGACCATGCCGCTGCTCCAT
GGACACACGGACACAGTGACGGACCTTAAGTTCTCCCCGTTCCACGACGG
GCTGCTGGCCACCGCCTCGCAGGATTGCCTGGTCAAGATCTGGCACATAC
CGGAAAAAGGTCTGGAGCAGTCGCTTTCCGATCCGGAGGCAATCTTCTCA
CACAAGCAGAGACGCGTAGAGACAGTGGGCTTCCATCCAACAGCAGATGG
TTTGATGTACTCCACAGCCGCCGGCTGCGTGGCTCTCTTCGATCTCAGCA
CTCAAAAGGAGATATTCTCGAACAATGAGCACCCCGAGGTGATACAGTCG
GCCAGTTGGCGCGAGGACGGTTCTGTTTTGGCCACCAGTTGCAAGGATAA
GAATGTGCGAATCTTCGATCCCCCGTGCCGCTGGTTCACCCATCCAGCTG
ACTGCTGAATCGCATCAGAGCATCAAGGATTCGCGGGTGGTGTGGTTAGG
CAATCAGCATCGCATCCTGACCACTGGCTTCGATGCGGCCCGCCTGCGAC
AGGTGATCATCCGTGATGTGCGCAACTTCAACACTCCAGAGAAAACTCTC
GAACTGGACTGCTCGACGGGCATATTGATGCCCCTCTTCGATCCCGACAC
CAATATGCTTTTCCTAGCCGGAAAGGGTGACACACCATTAAACTATTTGG
AGATTACGGACAAGGATCCGTATTGATTTGAGGGCTTGCGTCATACTGGC
GAGCAACAAAGGAGCTTGTCTCGTGCCCAAGCGGGCACTAAGCATGGAAG
CGAAGGTTAACGGGTGTTGCAATTGACTCAACATGTCATACCATCATGTA
CCAGGTGCCTGAAGGACTACGTGATTTCCAGCCGATTCTATTTCCGGAAC
ACTGCTAAAAAAAGACTGG
FMO06201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pod1-RG | 6374 | CG4532-RG | 315..1403 | 22..1098 | 4885 | 97.6 | Plus |
| pod1-RF | 6031 | CG4532-RF | 315..1403 | 22..1098 | 4885 | 97.6 | Plus |
| pod1-RD | 5837 | CG4532-RD | 354..1442 | 22..1098 | 4885 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6806881..6807394 | 519..1027 | 2120 | 95.9 | Plus |
| X | 23542271 | X | 6805909..6806220 | 22..333 | 1560 | 100 | Plus |
| X | 23542271 | X | 6806617..6806804 | 331..518 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:08 has no hits.
FMO06201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:20 Download gff for
FMO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RD | 347..1424 | 16..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:58 Download gff for
FMO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RB | 506..1583 | 16..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:56 Download gff for
FMO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RD | 347..1424 | 16..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:56 Download gff for
FMO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6805902..6806218 | 16..331 | 99 | -> | Plus |
| X | 6806618..6806804 | 332..518 | 100 | -> | Plus |
| X | 6806881..6807441 | 519..1070 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:20 Download gff for
FMO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6699935..6700251 | 16..331 | 99 | -> | Plus |
| arm_X | 6700651..6700837 | 332..518 | 100 | -> | Plus |
| arm_X | 6700914..6701474 | 519..1070 | 95 | -> | Plus |
