FMO06202.5prime Sequence
838 bp (-73 high quality bases) assembled on 2008-09-15
> FMO06202.5prime
GAATCCTTTATCGTCGAATGGCCGCGATGACAAAGAAAGTGGGGGCGTGG
CCGGCGTGAACGGGGATCTGTGGCGCGAGTGCGTCGCCTGGCTGACCAGG
TGCAAGGTCATTCCGCCCGACCACAAGGCCGCCCAGCCGGACGCCGAGAT
CCGCATCCTGGCGATGACGCTGCGCGACGGCGTGCTGCTCTGCAACCTGG
TCATCCACCTGGACCCCAGCAGCTTGGATCCGCGCGAGTTCAATCGCAAG
CCGCAAATGGCACAGTTCCTGTGCAGCAAGAACATCAAGTTGTTCCTGGA
CGTGTGCCACAACAACTTCGGGATCCGGGACGCCGATCTCTTCGAGCCGA
CAATGCTGTACGACCTGACCAACTTCCACCGTGTCCTCATCACGCTCTCC
AAGTTGTCGCAGTGCCGCAAGGTGCAGCAACTGCATCCGGATCTTATTGG
CTTCAACCTACAGCTTTCGCCCACGGAGCGTTCCCATTCGGACGAGGCCA
TCTACAAGGACCTGCATTCCACTACCACCGACAATATTGCATGCAATGGA
ACCGGTTACGACCACACCAACACAAAAGAGGAGGAGGTGTACCAAGACCT
GTGCGCCCTGCACAGGACGAGTAGAAGCCAGACCGCCTCGTCGACGAGCT
TTTGAGCAGCGCGACTATGTCATCCCGCGAGCTGATCGACACGGAGTCCA
ATTACCTGGACGTTCTCACTGCGCTGAAGACCAAGTTTATGGGTCCGCTG
GAGCGGCATCTCAACCAGGACGAGCTGCGTCTCATATTCCCGCGCATCAG
AGAGCTGGTCGACATCATACAAGTTCCTGGACAAACTA
FMO06202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vav-RB | 4603 | CG7893-RB | 549..1347 | 40..838 | 3905 | 99.5 | Plus |
| Vav-RA | 3412 | CG7893-RA | 549..1347 | 40..838 | 3905 | 99.5 | Plus |
| Vav-RD | 3925 | CG7893-RD | 549..1031 | 40..522 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19262368..19262593 | 40..265 | 1130 | 100 | Plus |
| X | 23542271 | X | 19263130..19263314 | 263..447 | 925 | 100 | Plus |
| X | 23542271 | X | 19269482..19269652 | 630..802 | 765 | 98.8 | Plus |
| X | 23542271 | X | 19269257..19269365 | 523..631 | 545 | 100 | Plus |
| X | 23542271 | X | 19263881..19263955 | 448..522 | 375 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1596..1634 | 526..564 | 114 | 76.9 | Plus |
FMO06202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:31 Download gff for
FMO06202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vav-RA | 544..1346 | 34..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:06 Download gff for
FMO06202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vav-RB | 533..1335 | 34..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:53 Download gff for
FMO06202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vav-RA | 544..1346 | 34..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:53 Download gff for
FMO06202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19263133..19263314 | 266..447 | 100 | -> | Plus |
| X | 19263881..19263955 | 448..522 | 100 | -> | Plus |
| X | 19269257..19269365 | 523..631 | 100 | -> | Plus |
| X | 19269484..19269651 | 632..801 | 98 | -> | Plus |
| X | 19269721..19269758 | 802..837 | 94 | | Plus |
| X | 19262363..19262593 | 34..265 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:31 Download gff for
FMO06202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19163754..19163791 | 802..837 | 94 | | Plus |
| arm_X | 19156396..19156626 | 34..265 | 98 | -> | Plus |
| arm_X | 19157166..19157347 | 266..447 | 100 | -> | Plus |
| arm_X | 19157914..19157988 | 448..522 | 100 | -> | Plus |
| arm_X | 19163290..19163398 | 523..631 | 100 | -> | Plus |
| arm_X | 19163517..19163684 | 632..801 | 98 | -> | Plus |
