FMO06203.5prime Sequence
1166 bp (960 high quality bases) assembled on 2008-09-15
> FMO06203.5prime
CAGTCGACATGGGAAAAAAACTAGAGCGGAACGACGTGTGTCGGGTGCCA
GAGAACATTAATTTCCCGGCCGAGGAGGAGAACGTACTGCAGAAATGGCG
ACACGAAAATATCTTTGAAAAGTGCAGCCAGCTGTCGAAGGGAAAGCCCA
AATACACGTTCTACGATGGACCGCCCTTTGCAACCGGGCTGCCCCACTAC
GGACACATTCTTGCTGGCACCATCAAGGACATCGTCACACGGTACGCATA
CCAGCAGGGATACCATGTGGACCGTCGCTTCGGCTGGGATTGCCACGGAC
TGCCCGTGGAGTTCGAGATTGACAAGCTGCTGAATATCAAGGGTCCTGAG
GACGTGGCCAAGATGGGAATCGCAGCCTACAATGCCGAGTGCCGGAAGAT
TGTCATGCGTTACGCAGATGAGTGGGAGAATGTGGTGACGCGCGTGGGTC
GCTGGATTGACTTCAAGAACGATTACAAGACGTTGTACCCATGGTACATG
GAGTCCATTTGGTGGATCTTCAAGCAACTGTTCGACAAGGGTCTGGTCTA
CCAGGGCGTTAAGGTGATGCCCTATTCCACCGCCTGCACAACGTCCCTTT
CGAACTTCGAGGCCAACCAAAACTACAAGGAGGTTGTGGACCCTTGCGTA
GTAGTTGCACTGGAGGCCGTTTCGTTGCCCAATACCTTCTTCCTAGTGTG
GACCACCACGCCATGGACACTGCCCTCAAACTTCGCATGCTGTGTTCATC
CGACGATGACCTATGTAAAAGTGCGCGACGTAAAGAGCGACCGACTTTTT
GTTCCTCGCAGAGTCTCGTCTCTCTTACGTGTACAAATCGGAGACGGAGT
ACGAAGTGAAGGAAAAGTTTGTTGGCAAAACCCTTTAGGACCTTTCACTA
CAAGCCGCCTTTTCCCTTACTTTGCGAGCGAGGAGCTGAGGTGAAAGCTT
ATCGGTGTCCTGTCGGCGAGTTCGTGGACTGAAGATTCCGGTACGGGTAT
TGGTGCACCATGCTTCCTACTTCGGAGAAAGACGATTATTGGGTGTGTGC
CTCGCTGCGGACTCATCTCAAAGTTCCAGTGAGTTTCTCTGCCCAGTGCA
CGAGGCAGACGGTTACTACGAGGCAAAGCGATTCCAGGCCAATACGTTCA
AATCTCTGATAACCAA
FMO06203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-ile-RD | 3845 | CG11471-RD | 78..1233 | 8..1166 | 5100 | 96.9 | Plus |
| Aats-ile-RC | 3820 | CG11471-RC | 53..1208 | 8..1166 | 5100 | 96.9 | Plus |
| Aats-ile-RA | 3899 | CG11471-RA | 132..1287 | 8..1166 | 5100 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22289004..22289953 | 152..1108 | 4025 | 97.1 | Plus |
| 3L | 28110227 | 3L | 22288796..22288939 | 8..151 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:29 has no hits.
FMO06203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:44 Download gff for
FMO06203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-ile-RA | 128..1268 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:08 Download gff for
FMO06203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-ile-RD | 77..1217 | 1..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:44 Download gff for
FMO06203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-ile-RA | 128..1268 | 1..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:44 Download gff for
FMO06203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22288792..22288939 | 1..151 | 98 | -> | Plus |
| 3L | 22289004..22289996 | 152..1147 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:44 Download gff for
FMO06203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22281892..22282039 | 1..151 | 98 | -> | Plus |
| arm_3L | 22282104..22283096 | 152..1147 | 96 | | Plus |
