Clone FMO06204 Report

Search the DGRC for FMO06204

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:62
Well:4
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(1)G0232-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06204.5prime Sequence

419 bp (339 high quality bases) assembled on 2008-09-15

> FMO06204.5prime
GCAGCAGGAGCGAGCAGGATAGCGGCTGTCATCGGCGTCTTTTCCTGTGC
ATTGCCAAGGCTGTGAAACATTCATTGATCTCTGCAACAATCTAGGTGCT
AACTGCAGCACGACGACAGCCACATCCCCGTCAACTTCCTCCTCCTCAGC
CAGCAGCACGCAGAACTTAATAGCAGTAGTGCCGCCACAGTTGCAGCAGC
TGCAGGTGCAATTACCGGCGCCAGGTGGAGGAGGAGGAGCAGGTGCAGGA
GGAGGAGGTGGTGGAGGTGGGGGAGCTGCGCCTGTGAGGCGCCACATCTC
GCATAAAACAGCCGTGAAGTTTTTGTACCCCCGTAAATTTGATTTTCCAC
GAGCAGTCTCACTGTACGAACAGCATGAACAGATCCGCCTGAAGGAGTAT
CTATATAACATCGATTCGG

FMO06204.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-RA 3046 CG32697-RA 234..653 1..419 1985 98.3 Plus
l(1)G0232-RB 2969 CG32697-RB 214..576 58..419 1700 98.1 Plus
l(1)G0232-RG 5668 CG32697-RG 487..848 59..419 1695 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9644007..9644369 419..58 1675 98.1 Minus
X 23542271 X 9650484..9650543 60..1 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:47:32 has no hits.

FMO06204.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:50 Download gff for FMO06204.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 234..653 1..419 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:09 Download gff for FMO06204.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 215..634 1..419 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:28 Download gff for FMO06204.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 234..653 1..419 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:28 Download gff for FMO06204.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9644007..9644367 60..419 98 <- Minus
X 9650485..9650543 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:50 Download gff for FMO06204.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9538040..9538400 60..419 98 <- Minus
arm_X 9544518..9544576 1..59 100   Minus