FMO06205.5prime Sequence
1093 bp (847 high quality bases) assembled on 2008-09-15
> FMO06205.5prime
CAGTCGACATGAGTCGCAGGAGGGCTCACGACACGGAGGATGAGGGCTAT
GATCATCGGCGCAACAAGCGTAGACGTGTGTCCGAAAACCAGGAGATCGA
GGATCGTCTGGAGTCGCTGATACTGCGGGTGGGCGAGCGTAGCACCTCCT
CCGTGGAATCGAACCTAGAGGGACTCGTCTCCGTTCTGGAGGCCGATCTG
GGCACGTTTCGCCTGAAGATCCTGCGCATCCTGTCCGACTGCGCCGTGCG
AATGCCAGAGAAGTGTACCGTTTACACCACGTTGGTGGGCCTGCTCAATG
CCAAGAACTACAAGTTTGGCGGCGAGTTCGTGGATCACATGGTGAAGACC
TTCAAGGAGTCCCTCAAGATGTGCCGCTGGGATGCCGCCCGCTACTCGCT
GCGCTTTCTGGCCGACCTGGTCAATTGCCACGTCATTTCGGCCACCAGTC
TCCTCCAGCTGCTGGACACCATGATCGATGTCTCCAACGAGGATACAGTG
CCCCAGGTGCGTCGCGATTGGTTCGTCTTTGCTGTGCTCTCCACGCTACC
CTGGGTGGGTCGCGATCTCTACGAGAAGAAGGAGTCTGCCCTGGAGTCCC
TGTTGCTTAGGATCGAGGTCTATCTAAACAAACGCTCAAAAGAAGCACCA
TAATGCGCTGAGGGTGTGGTCCTCAGACGCTCCGCATCCACAGGAGGAGT
ACTTGGACTGCCTGTGGGCGCAGATACGCAAGTTGCGGCAGGACCATTGG
GCGGAGAAGCATATACCACGACCCTATCTCGTATCGATTCAATACTTTGC
GAGGCATTGCAGCACAATCTGCCCACGATTGTGCCGCCGCCGCATCACGA
CAACTTTGATAATCCCATGCCCTGGTGGTGTACCGCATGTTCCACTACAC
CGACTGCCCCGATGGACCAATCTGACTGGTGCCACTCATAGAGCGCTTTT
GATTGAAGAGCATCTACCCAAATCATTGAACCAACCATCGTAAGCGAAAG
GATGCGCCGCCCAACTGCTTAACTTTCCGAAAAGCAAAAAATACCGCTGG
AATACTGCTACGTCTAGGGGGATCTCGACGAAGTATTCATATG
FMO06205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp80-RB | 3236 | CG7035-RB | 281..1349 | 9..1068 | 4715 | 96.7 | Plus |
| Cbp80-RA | 3017 | CG7035-RA | 316..1384 | 9..1068 | 4715 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4650431..4651457 | 51..1068 | 4230 | 96.6 | Plus |
| X | 23542271 | X | 4650330..4650372 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:32 has no hits.
FMO06205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:47 Download gff for
FMO06205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 281..1332 | 9..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:10 Download gff for
FMO06205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RB | 310..1361 | 9..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:46 Download gff for
FMO06205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 316..1367 | 9..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:46 Download gff for
FMO06205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4650330..4650372 | 9..51 | 100 | -> | Plus |
| X | 4650432..4651440 | 52..1051 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:47 Download gff for
FMO06205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4544363..4544405 | 9..51 | 100 | -> | Plus |
| arm_X | 4544465..4545473 | 52..1051 | 96 | | Plus |
