FMO06207.5prime Sequence
1116 bp (781 high quality bases) assembled on 2008-09-15
> FMO06207.5prime
CAGTCGACATGGCCACTATTGGAAACAAGATAAACAACAGCTACGAATCG
GAGCCTTCTACAGGAAGCGGGTCTTCGCTCAGTGAAAACAATGAGAGCCA
CTTATCTGACGAGGATCACATGAACTTACCGTATCTGATGAAACCGAAAG
CACTGAGCAGCCAGCCCATCAAGGAAACCCCAACGCCACCCAATCCGAAG
ACGGGCAGCCAGGAATCGCAGTTCCTGGGCTTCGGAGACAGCCCATATGG
CCAGGTGAACAAGCGTCTGTATGGCTCCCAGCTGCAGAACCTTAAGCTGC
CGGAGGTGGAGCCCCCTGCCGTCCGACGTCCCTCGCCGGGCAAGATTGTC
TTTCCCCGGTTCTACGACACCCTCATCGAGGAGAACAGCTGCAATGCCGT
GGACATGGCCGTGTCAGTGGCCACGACAGCCACCACGACAACGGGCAGCC
TCTCCTTCGATGGCAAAATCAAGAGCCTGACCGCAAAGCCCGAAATTCAG
GACAAGCCTGGGCCCTCCAATGCTACGAATCCACGTCTGTCAAACGTGCT
AGAAACCTCGCTCAACACCTCGCAGCAGAAGTTCAACAACGAACGCTCAC
CTGATCTCTTTGCCGACAGCGACGATGAAGCTGACAACGACGAGCAACCG
GAAAAAGAGCCGCCTACCAGGCTGGAGGATCTGCCCGAAGTGTTGGAAGA
GTCGCAGTGCACCCAGCGACGCACGAGCTCGCTCCCTCGCTGAATGCTCC
CACGGAGTCCAGTTTTGTGGATGAGCAGACGATTGGACCTTTCGAGCACC
CAGCTGAACGCCAACGACCCCCGGTCCGCACTTCTTGGAGATCTGCAGGA
GAGAACGGGAGCTGTATCGGCGGATTCGTCGCTGCCTCTAGGGAGTCGTC
CGCCGCCCTCGGTGACTGCACCGATGTTGACGCACTCAAATGGTGCTTAG
CATGAATCAACGTGCTAACTTTCTCTCCAAAGATAGCCACCATCTAACCC
TTATCGAGACAGTGCATTACCGAACTACCTTCCTTGTTTCGACCATCTCA
CAGTCCCTCGAGCCCAAACATGGGCCGGCAGATGGCTGGGAGGAAAACAC
TCTTGCACTGACCTAC
FMO06207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mi-RA | 3845 | CG5360-RA | 398..1516 | 9..1116 | 4675 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23524469..23525388 | 71..988 | 3975 | 97.6 | Plus |
| 2R | 25286936 | 2R | 23524350..23524412 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:24 has no hits.
FMO06207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:21 Download gff for
FMO06207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mi-RA | 392..1474 | 1..1075 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:13 Download gff for
FMO06207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5360-RA | 390..1472 | 1..1075 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:24 Download gff for
FMO06207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mi-RA | 392..1474 | 1..1075 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:24 Download gff for
FMO06207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23524344..23524412 | 1..71 | 94 | -> | Plus |
| 2R | 23524470..23525483 | 72..1075 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:21 Download gff for
FMO06207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19411867..19411935 | 1..71 | 94 | -> | Plus |
| arm_2R | 19411993..19413006 | 72..1075 | 96 | | Plus |
