FMO06209.5prime Sequence
1176 bp (959 high quality bases) assembled on 2008-09-15
> FMO06209.5prime
CAGTCGACATGGACCCTATGAAAGAGGAGGCGATCGAATTGAATGGCCAT
GCTATGCAAATGGCCGAAGCTGAGCAAGAAAATGGCGCTGGCGCCCTGAA
AATTGCCACCAATGCGGGTGCAACCGATCGTCCAGCGCATCAGCAGCTTC
CGCTGCCAGTCGAAGATCAGCAGGATGAGGTGCTGACCCCCGCTGAGAAG
GGCAAGTTCGAGTACCCGCCCCCTCCACCGCCACCAACTCCAGTCCAGGC
TCCGCTAGCCACCAAGGCCACCGCTCTGAATGCCAGTCAAGAGCATGACG
ACGACGAGGCCAACTCCGAGAAGTGGGAGGATCCGTGCGCTCCGCCCCCG
CCTCCTCCGCTGCCGACTAGCGCTTTCCTGGCCACCGGACTGGGCTACCT
CAAGCTGCCCGCCTTCAAGCTGAAGGACGCACTGGAGAAGGCCATCACCA
AGTTGGAGGCCAACAAGCGGACGCTAAAGGCCAGCCCTGAGTCTTCTCGT
TCCATCAAAAACAAGAATGTGGTGGCCCTGGAGATGTTACCCAGGCGCTC
AAACCCAGAAACGATCGGCGATGGATCCATGTTGGCATCCACATCCACGG
CTGTTATGCTGCAGACCAAAAAGCCCGCCGTTATTGTGGAGATGGAGAGG
CGTTGTAAGATCATCAATTTACTGGCCAAACAGAAATCAAATCCTCGAAT
CCATTTCGGGGGAGGCCATTCCGATGCATGGACCCTCGAAGCATCTGCAC
GAGGACGAGGGTCTGACCCTGCAAGTTCTCTCGGCCCGAGCATCCACACC
GTACACACAGCCCTCAAGCATGTTGTCCTGCACGGCCGTTAGTTGTGACC
TGGAAGCACGATTCCCCCCCGGAAGCAAGTTGGGCTAGCAAGGAAGGCCG
TGCCCGGAGCAACAGTCTTAGTCAGGTGCAGCAAAAGCGTCCACCCAGCA
CAGGCATTCAACAGCTCAGAAGTCTGCAAGCACCCAAGGCTGTTTCGTCC
TACTTACTGCCTCCGGTGGTCACACAAGCCGGGTCAAGAGCTATAACCCC
GCTCCCGCCTGAATGAACTTCCCAACGGGATGTTCAATGCCCTGAATGCC
AGTCCCAAGGAAGCTTTTGGTGATGTCCTCGCACTCGCCACTTACAACAA
CTTGGGATTTGGAAGGGAAGGCTTCC
FMO06209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 442..1591 | 9..1175 | 4885 | 95.9 | Plus |
| CG34310-RC | 4002 | CG34310-RC | 138..1287 | 9..1175 | 4885 | 95.9 | Plus |
| cup-RC | 4306 | CG11181-RC | 442..1591 | 9..1175 | 4885 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6664105..6664587 | 9..491 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 6664929..6665522 | 490..1095 | 2090 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:13 has no hits.
FMO06209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:22 Download gff for
FMO06209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 130..982 | 1..854 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:16 Download gff for
FMO06209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 133..985 | 1..854 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:01 Download gff for
FMO06209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RC | 434..1286 | 1..854 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:01 Download gff for
FMO06209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6664097..6664587 | 1..491 | 99 | -> | Plus |
| 2L | 6664931..6665292 | 492..854 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:22 Download gff for
FMO06209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6664097..6664587 | 1..491 | 99 | -> | Plus |
| arm_2L | 6664931..6665292 | 492..854 | 99 | == | Plus |
