FMO06210.5prime Sequence
602 bp (599 high quality bases) assembled on 2008-09-15
> FMO06210.5prime
CAGTCGACATGCCCGTCTTTCACACAAAAACCATCGAGAGCATTCTAGAT
CCTGTTGCCCAACAGGTATCTCGTCTGGTGATCCTTCACGAGGAGGCCGA
GGATGGCAACGCGATGCCGGACCTCAGTCGACCGGTGCAGGTGGTGTCGG
CGGCAGTGGCTAATCTCGTGAAGGTGGGCCGCGATACGATCAACAGCTCC
GACGACAAGATCCTGCGCCAGGACATGCCCTCGGCATTGCACCGCGTGGA
GGGTGCCTCGCAGCTGCTGGAGGAGGCGTCCGATATGCTCCGCTCCGACC
CGTACTCGGGTCCGGCGCGCAAGAAGCTAATCGAGGGAAGCCGCGGCATT
CTGCAGGGCACCTCCTCGCTGCTGCTTTGCTTCGACGAGAGTGAGGTGCG
GAAGATCATCCAGGAGTGCAAGAGGGTACTGGACTACTTAGCCGTGGCGG
AGGTGATAAACACCATGGAACAGCTGGTGCAGTTCCTCAAGGACCTCTCG
CCCTGTCTGAGCAAGGTGCACCGGGAGGTGGGCGCCCGCGAGAAGGATCT
GACCCACCAGGTGCACAGCGAGATATTGGTGCGATGCTTGGAGCAAGTGA
AG
FMO06210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vinc-RC | 3838 | CG3299-RC | 285..878 | 9..602 | 2940 | 99.7 | Plus |
| Vinc-RB | 3744 | CG3299-RB | 191..784 | 9..602 | 2940 | 99.7 | Plus |
| Vinc-RA | 3766 | CG3299-RA | 213..806 | 9..602 | 2940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2217559..2218098 | 602..63 | 2670 | 99.6 | Minus |
| X | 23542271 | X | 2220370..2220429 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:19 has no hits.
FMO06210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:42 Download gff for
FMO06210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vinc-RA | 205..806 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:03 Download gff for
FMO06210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vinc-RA | 316..917 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:22 Download gff for
FMO06210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vinc-RA | 205..806 | 1..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:22 Download gff for
FMO06210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2217559..2218095 | 66..602 | 99 | <- | Minus |
| X | 2220373..2220437 | 1..65 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:42 Download gff for
FMO06210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2111592..2112128 | 66..602 | 99 | <- | Minus |
| arm_X | 2114406..2114470 | 1..65 | 95 | | Minus |
