FMO06213.5prime Sequence
949 bp (-49 high quality bases) assembled on 2008-09-15
> FMO06213.5prime
CTTATTCAGAGGTTATCAGTCGGACATGCAAGCGTCGCCGGATGCGTCCT
TCGGGATTAGCTGCATCTTCTGCTGCGCTCTCTGTGTTCTTCACATACTT
TATTTCCATACGTACATTTCCCTCCAGCGCTTGCCCTGTTTTAGTGTGGC
AAACATCCACGCCAAGTTAAAGGAGGGCCAGCATCCGTTGAGTGATTCCT
ACAAGCGGTACAAGCAGCCCGGCATCACCACAGCCAGCCAGGAAGGACTT
AGTAGCGCGGGTCAAGGTCAACAGGGTCACCAGAGTCACCACCCGACGCA
CCAACCGCATCCGACGGCGCAGCCACCACATGGAATCCTGAGGAGTGGCA
ATTCCCGACTCCATCAGGTCTACGATGCGGGACGAGGACACCCTGGAATG
ACCGGACAGATTGGCCATTCCGGACAGACGCAAACACTACCAGGAGCATG
TCGCAAGCATCCGAATGCCGGATCGAACTTAAATCTCTATCTGCATAATG
ACCTGGAGAGGCGTTTTTACTTCGAAAAAGCCAGCTGTGTCCAAGTGTAA
TCTGCACTCGCGCAGCTTCGCCAAGTCGTTGAAATGAGCTTTGCACGGAT
ACGTCCGTGTCCTCCACCCATGTTCCCGCACCCCTTCTCCCTTCCGCTGC
CGACCCATTACCTGCCCCCGCCCTGTTCGCCGACTTGCCTCAGAATTTCC
ACTCACCCGATCCGTATCTACGGCCACGGAAATATATCCAGCTTCATCTT
CGGCTCCAGCTCCGCCCTCCGCTCAAATGAAACGAAAGCAGCAGCGGAAC
ATGGTCACTAATACGAACACGAAGATCTCCAACAATCCCCATCCTCCAAC
TCGCAGATGACAGATCAGTCGCGTCTTTGCGGCCTGAAGCGTGGCCTCGG
AGACAAGGATGACTATTCCAGGAGTTCTGTCCGGCGAGCTTGTATGCGC
FMO06213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-RA | 3798 | CG11566-RA | 1732..2658 | 26..949 | 4365 | 98.6 | Plus |
| stg1-RA | 3798 | CG33670-RA | 1732..2658 | 26..949 | 4365 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21108783..21109270 | 26..513 | 2440 | 100 | Plus |
| X | 23542271 | X | 21109722..21110161 | 513..949 | 1730 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:59 has no hits.
FMO06213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:55 Download gff for
FMO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2658 | 26..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:21 Download gff for
FMO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2658 | 26..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:34 Download gff for
FMO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2658 | 26..949 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:34 Download gff for
FMO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21108783..21109270 | 26..513 | 100 | -> | Plus |
| X | 21109723..21110161 | 514..949 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:55 Download gff for
FMO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20979810..20980297 | 26..513 | 100 | -> | Plus |
| arm_X | 20980750..20981188 | 514..949 | 97 | | Plus |
