FMO06216.5prime Sequence
1153 bp (991 high quality bases) assembled on 2008-09-15
> FMO06216.5prime
CAGTCGACATGAACGGTGGCGGGGGTGGCGAGGATGATCAGCATCTGCCA
GGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCGGTGGGCGGGCGAGC
CACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCTAATCAAGCGATACT
TCCACCAACTACAATCCGGCTGTGGGAACGCCAACTGCAGCAATGCCAAT
TGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCCAACGAGGTGGCCGC
CAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCTCTGCGAGGCGTTCA
CATCGGAGGCCAACAGCCCCCAGGACGTGGACATGCTTTCGCCGAACGAC
AGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACAATTACCTCAGCCAG
TACCACCACGACAACCAGCAGACAATCGCAGTCAACGCCAGCTGCCGTTG
TAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTGTGCCGCAACTGGAT
ATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAACCGTGTACACCCAC
CCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCTGATAGCGCTCTATG
AGCAATGTAGGGCGGCTGACAGTTACGACAGGATTTGCCACGCAATCGGC
GTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGCTTCATTCGCAGCGC
AGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCTGGCCAATTCACCGG
GGGCTTTAAACAAGAGCAGCTACGAACTTTGGAAGGGGAACACGATAAAG
ACGAAGACAGTACACAACAGGTGGACGAACAATCAGAATCGGCGGCTAAT
GCTACTGCTACTGCAGAATCAGTCGAATCAGAGGCGGAGCCCGAAGAAGA
GGACGATGATGTGTGTTCATCCCAAAGCAGCGACACACTGGTGGATCTGC
CCGGGATGGCGACGAGTGCAGCGTCTCCTTTTCGCTGTCAAATACGAGCT
ATAACGGAGAAGCTTACCAGCAGCGTTATTCAGCTGTCTGACTGGGTGAT
TACATGCGTAAGGATTGGGGAAAGGGTCATTCACTGTCTGGTCATCTGCT
TGAATCTAGCCACAATACCAATAACAGTGGTGAAATGGACATATCTGGAC
ACG
FMO06216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ube3a-RA | 3674 | CG6190-RA | 378..1524 | 9..1151 | 5390 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11208934..11209733 | 1113..315 | 3655 | 98.5 | Minus |
| 3L | 28110227 | 3L | 11209836..11210093 | 316..59 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 11210154..11210206 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:09 has no hits.
FMO06216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:42 Download gff for
FMO06216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 370..1510 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:26 Download gff for
FMO06216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| As-RA | 367..1507 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:15 Download gff for
FMO06216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 370..1510 | 1..1142 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:15 Download gff for
FMO06216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11210154..11210214 | 1..61 | 95 | | Minus |
| 3L | 11208929..11209731 | 317..1118 | 98 | <- | Minus |
| 3L | 11209836..11210090 | 62..316 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:42 Download gff for
FMO06216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11202029..11202831 | 317..1118 | 98 | <- | Minus |
| arm_3L | 11202936..11203190 | 62..316 | 100 | <- | Minus |
| arm_3L | 11203254..11203314 | 1..61 | 95 | | Minus |
