FMO06217.5prime Sequence
1020 bp (930 high quality bases) assembled on 2008-09-15
> FMO06217.5prime
CAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTTGCTCCAGG
CCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAGAACGTGGC
TCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGATGAGAATC
CATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAACACAACGGC
TTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGACGGCGAGAA
CAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAAGTCCAACC
AAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCGGTCTCGAT
AAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTGGAACACCC
CTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTGGTCAAAGG
CAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATGGGAAATTG
GCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAGTATTTAGA
GCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCTTCGCAGCG
AGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGCTGTCCTCG
TACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCCAAGTGGGA
GGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCTACAGACAT
TTATGCCGCCGTCGGTGATGATGTCGCCACGGCGCCTGCGCACCCTGCTG
CAGCAGGCCGTGAGCTGCAGAGCCAACACTGCCCCTGCCACGACATGGCG
TGGGAGACGAATCTGGAGACGTCTCGCTGCTCACCGACCCTGCTGCACCA
CGGACGCTTTCCAATGAAACTATCTAATTCCTACCGACCATGCCGACGAA
GTCTGGTTCTTGCAAGTCTCGCCCGATGCTCCAGCTAGCGACCGGCAGCA
AAGACTCCACCTGGTGATAA
FMO06217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7611-RJ | 3001 | CG7611-RJ | 609..1619 | 8..1010 | 4685 | 98.1 | Plus |
| CG7611-RI | 4464 | CG7611-RI | 2072..3082 | 8..1010 | 4685 | 98.1 | Plus |
| CG7611-RA | 3810 | CG7611-RA | 1418..2428 | 8..1010 | 4685 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21525257..21525717 | 8..468 | 2305 | 100 | Plus |
| 3L | 28110227 | 3L | 21525982..21526534 | 466..1010 | 2190 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:00 has no hits.
FMO06217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:50 Download gff for
FMO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7611-RA | 1409..2436 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:28 Download gff for
FMO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7611-RG | 931..1956 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:14 Download gff for
FMO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7611-RA | 1409..2436 | 1..1020 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:14 Download gff for
FMO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21525248..21525716 | 1..467 | 99 | -> | Plus |
| 3L | 21525984..21526542 | 468..1020 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:50 Download gff for
FMO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21518348..21518816 | 1..467 | 99 | -> | Plus |
| arm_3L | 21519084..21519642 | 468..1020 | 96 | | Plus |
