FMO06220.5prime Sequence
842 bp (842 high quality bases) assembled on 2008-09-15
> FMO06220.5prime
CAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGCCGGTGGAC
AGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAGAAGTCGCA
CATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTGTCCCAAGG
ACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCCTGCAGCTG
CCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTGTTACAGCA
CAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCTGGCGCTGG
TGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGGAGTGGCGG
GAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCTTTCGACTG
GACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGTGCGATCGG
AGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGCGCGAGAAC
ATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTGCACGACCA
CGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTCTGGCTTCT
TCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAATCCGGATG
CACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTTATCCTGAAAG
AGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTGTGTGGCC
TTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGAAGTCCAG
CAGTTGCACAAGCTCTTCTTTAAGGCAAGCTTTCTAGACCAT
FMO06220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9578-RA | 1094 | CG9578-RA | 128..943 | 9..824 | 4035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20170422..20170758 | 22..358 | 1685 | 100 | Plus |
| X | 23542271 | X | 20171130..20171375 | 579..824 | 1135 | 99.2 | Plus |
| X | 23542271 | X | 20170845..20171065 | 358..578 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:15 has no hits.
FMO06220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:54 Download gff for
FMO06220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9578-RA | 121..943 | 1..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:30 Download gff for
FMO06220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9578-RA | 101..923 | 1..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:22 Download gff for
FMO06220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9578-RA | 121..943 | 1..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:22 Download gff for
FMO06220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20170424..20170758 | 24..358 | 100 | -> | Plus |
| X | 20170846..20171065 | 359..578 | 100 | -> | Plus |
| X | 20171130..20171375 | 579..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:54 Download gff for
FMO06220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20064457..20064791 | 24..358 | 100 | -> | Plus |
| arm_X | 20064879..20065098 | 359..578 | 100 | -> | Plus |
| arm_X | 20065163..20065408 | 579..824 | 99 | | Plus |
