FMO06221.5prime Sequence
1043 bp (874 high quality bases) assembled on 2008-09-15
> FMO06221.5prime
ACGAACCTTTCTTGGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCC
TGCTGGGCTCCAGTTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGAC
ACCGACTTGCCGGAGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCAT
CAAAAATGAATACTTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACA
TTGTCCTGGACCGACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCT
GCCATCAGTGGCTCCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACA
TGGAATCAACACGCTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCAC
AAATCGACGACTCCGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGAC
GCCACCACCACCAAACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAA
ACTTAACATGGTGGAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGG
GTCCCCAAATTAGAAAGATATATCATCAACGCTGCCACGCCTACGAAGAG
GCCAACCGAATCTCATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGG
CTCCGTCGCTCCAATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGG
ACATCCGCAAGAAGAACTGGTCCAAAGAATGCCTAAATGTTTTGTGCACC
CGATTTGGACAAGCGCCTGACATTCCGGTCAGTCCAAATTCGATTTTAGC
AACGTCTCTCCGTACTTTGTGGAGCGCTTTAGTTTTTCCCCCGATGCAAA
GTGGCTGCTAGCACGGGGGACAATCTTCGGCGCTGCTGAATGTTGGTGGC
AGCAGCTGCTAACATTTCCATGGGCACATGACCCCTAATGATGAGCTGAT
GAGCGCTAACTGGAAGAGGTCTATACCCTGCATCAACTTGAAACGGAAGA
TCTGGGCCTCATGTTTAAAATGCTTCTGTCGAGAAATGACAAGAAACAAC
CGCGGTAATGGATAATCAATGAATCCCACTCCAGCCCGGGAAC
FMO06221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3534-RA | 1979 | CG3534-RA | 167..1135 | 1..950 | 4200 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16997465..16998143 | 160..835 | 3120 | 99 | Plus |
| 3R | 32079331 | 3R | 16997051..16997174 | 36..159 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 16996612..16996648 | 1..37 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:49 has no hits.
FMO06221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:00 Download gff for
FMO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3534-RA | 167..1156 | 1..966 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:32 Download gff for
FMO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3534-RA | 161..1150 | 1..966 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:35 Download gff for
FMO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3534-RA | 167..1156 | 1..966 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:35 Download gff for
FMO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16996612..16996648 | 1..37 | 100 | -> | Plus |
| 3R | 16997053..16997174 | 38..159 | 100 | -> | Plus |
| 3R | 16997465..16998292 | 160..963 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:00 Download gff for
FMO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12822334..12822370 | 1..37 | 100 | -> | Plus |
| arm_3R | 12822775..12822896 | 38..159 | 100 | -> | Plus |
| arm_3R | 12823187..12824014 | 160..963 | 95 | | Plus |
