FMO06223.5prime Sequence
433 bp (-86 high quality bases) assembled on 2008-09-15
> FMO06223.5prime
CAGTCGACATGAGATTCCAGTGGTTCTTATCGGCCAGTGCGAGCTTGTCG
CTGTTCCTTCTCCTGGACTTCGTCGTATGGATTCACGGCGAGCGGGACTT
CAATGTCAACGACTCCCAGGTCCCTGTAATTGAGCCAAAGGATGTGCCCG
CCTACAAACAGGATCCGTATGTTACGGAATTGATGAGTTGCCAAAATACT
CCGAGTGAAATTGTGCTTTCACTTTTGTTGAAGAAGCACGACTGGAGTGA
GCTGACGGCCACGAAACGAGCTCATGTCCAGGCCAAGTTGGCCAAGTTCT
TTGCCATACCCAAGGAATTCATTTCCCTGGATTCGGTGTCTAAACGCGAA
CTGAGATCCATGCACAAGTTGGCCATGAGAAAAGGAGGCAAGGGCAACAA
GAATATCGAGACCCTGAATCGTCGCCTGGGACG
FMO06223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dg-RD | 6533 | CG18250-RD | 647..1073 | 7..433 | 2135 | 100 | Plus |
| Dg-RA | 5247 | CG18250-RA | 647..1073 | 7..433 | 2135 | 100 | Plus |
| Dg-RC | 5793 | CG18250-RC | 647..1073 | 7..433 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16089091..16089288 | 315..118 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 16088920..16089040 | 433..313 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 16089569..16089683 | 121..7 | 575 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3414..3449 | 57..22 | 126 | 83.3 | Minus |
FMO06223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:11 Download gff for
FMO06223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RC | 640..1073 | 1..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:18 Download gff for
FMO06223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RC | 613..1046 | 1..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:20 Download gff for
FMO06223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RC | 640..1073 | 1..433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:20 Download gff for
FMO06223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16088920..16089038 | 315..433 | 100 | <- | Minus |
| 2R | 16089092..16089286 | 120..314 | 100 | <- | Minus |
| 2R | 16089571..16089686 | 1..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:11 Download gff for
FMO06223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11976425..11976543 | 315..433 | 100 | <- | Minus |
| arm_2R | 11976597..11976791 | 120..314 | 100 | <- | Minus |
| arm_2R | 11977076..11977191 | 1..119 | 96 | | Minus |
