FMO06224.5prime Sequence
592 bp (592 high quality bases) assembled on 2008-09-15
> FMO06224.5prime
CAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTTTGTGTCTG
CTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACAGACTTCCT
GCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGACACGACCA
TTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGCTGACCTGC
CGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGCCACAGGGA
TATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGACCAGAGAT
TCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGCGTATACGC
TACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATATCGACCAC
GCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACCCGTCACCG
ACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCACCATCAAT
CTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACCGTCATTTG
GTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
FMO06224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr8-RB | 4837 | CG32600-RB | 916..1499 | 9..592 | 2920 | 100 | Plus |
| dpr8-RA | 4958 | CG32600-RA | 1037..1620 | 9..592 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14444316..14444527 | 227..438 | 1060 | 100 | Plus |
| X | 23542271 | X | 14425184..14425359 | 55..230 | 880 | 100 | Plus |
| X | 23542271 | X | 14452968..14453096 | 438..566 | 645 | 100 | Plus |
| X | 23542271 | X | 14408273..14408322 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:29 has no hits.
FMO06224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:42 Download gff for
FMO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr8-RA | 1030..1620 | 1..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:57 Download gff for
FMO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr8-RA | 1030..1620 | 1..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:05 Download gff for
FMO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr8-RA | 1030..1620 | 1..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:05 Download gff for
FMO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14408266..14408321 | 1..57 | 93 | -> | Plus |
| X | 14425187..14425356 | 58..227 | 100 | -> | Plus |
| X | 14444317..14444527 | 228..438 | 100 | -> | Plus |
| X | 14452969..14453096 | 439..566 | 100 | -> | Plus |
| X | 14454061..14454086 | 567..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:42 Download gff for
FMO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14348094..14348119 | 567..592 | 100 | | Plus |
| arm_X | 14338350..14338560 | 228..438 | 100 | -> | Plus |
| arm_X | 14302299..14302354 | 1..57 | 93 | -> | Plus |
| arm_X | 14319220..14319389 | 58..227 | 100 | -> | Plus |
| arm_X | 14347002..14347129 | 439..566 | 100 | -> | Plus |
