FMO06226.5prime Sequence
975 bp (905 high quality bases) assembled on 2008-09-15
> FMO06226.5prime
AGCAGCAGCAACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGG
CAACGAGCAGCACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAAC
AGCAGCATGCCCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCAC
CATCACTATCAGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAA
CAGCAATAGCAGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATC
AGGCGACATTGCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGG
CTACCGAAATCGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGA
CTGCATCCTGGTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCC
TTACGGTCATGTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGAT
AGTGCCGTATACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCG
TCTATCTATGACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGT
CGTCCAATTCCGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCAT
CTGCCCGTGTTCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCC
CATGGTTTTTCCCTCCAGCCGTGTGCACTTTCCAAAAAACCATTCGACGG
TTGCCGCAGGCACTCATCATCGGTGTGCGAAAATGTGATACACTGGCGCT
GCTGGAGATGCTCTACCTACATCCGCGGATCCAGACGCGGCGGTGAGTGC
ACTTCTTCGACCGGGACGAGACTACCTGAAAGGTCTGGAGTGTACGCAGA
GATGCCTCATTCTTTCGTGTCAGATATCATCGAAAAGAGTCCAGCTACTT
TGTGTCGCAGAGTGCCGGACCTGTGCGGCCAATGAATGCCAGCATCAGCT
GCTCCTGAATGTCCGGGACCGGTGG
FMO06226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs3st-A-RB | 5724 | CG33147-RB | 1432..2421 | 1..974 | 4320 | 96.9 | Plus |
| Hs3st-A-RA | 5570 | CG33147-RA | 1432..2421 | 1..974 | 4320 | 96.9 | Plus |
| CG15772-RB | 1691 | CG15772-RB | 629..791 | 81..252 | 185 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18748051..18748463 | 297..710 | 2005 | 99.5 | Plus |
| 2R | 25286936 | 2R | 18745941..18746236 | 1..296 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 18748723..18748862 | 707..842 | 490 | 95 | Plus |
Blast to na_te.dros performed 2014-11-28 19:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..7000 | 1..252 | 457 | 67.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1129 | 178..252 | 177 | 73.3 | Plus |
FMO06226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:06 Download gff for
FMO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-A-RA | 1432..2421 | 1..975 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:39 Download gff for
FMO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-A-RA | 1417..2406 | 1..975 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:40 Download gff for
FMO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-A-RA | 1432..2421 | 1..975 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:40 Download gff for
FMO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18745941..18746236 | 1..296 | 100 | -> | Plus |
| 2R | 18748051..18748462 | 297..709 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:06 Download gff for
FMO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14633446..14633741 | 1..296 | 100 | -> | Plus |
| arm_2R | 14635556..14635967 | 297..709 | 99 | -> | Plus |
