FMO06227.5prime Sequence
1106 bp (931 high quality bases) assembled on 2008-09-15
> FMO06227.5prime
CAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATGCAAAGTGC
GGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGCAGCAACAG
AATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGGCGGCACCG
AGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCTCGACCTCG
GACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAGCGGCTGGC
CGTGCTATCGTTCGAGCAGGTGAACAAACTGCACGACGTCATGGACGAGA
AGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGGTGAAGCTC
AAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAGGTGAACGC
CGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGGCGGGGCAG
CTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACCTGGACCTG
ATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGCGTCAAGGT
GGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGTCTGCAAGC
GACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCAAGATGGTC
AAGGTGAACAACAACAATGACGGCGATCGCTGGTCCCTCATTTCGCTGGG
CAACTCGCCGGGCCACAAGAACGTCGAGCTGAAGTTCGTGGACACGATGA
GGCGCCAGTTCGAGTTCTCGGTGGACTCGTTCCAGATTGTGCTGGACTCG
CTGCTGCTCTTCTACGACTGCGCCGCTCTGCCCATCTCGGAGAACTTCTA
TCCAACGGTGGTCGGCGAATCCGTCTACGTGACTTCCAGGAGGCACTCTA
CCATTTGCAAATGAACTGATCTCAACGCGTCAGACGGAGAGATAGAGGCG
CAGCTGCTCAGTACTGCATCTATGTGCGTACTACAGTCGTCACTCGCAGC
CATCAGACCCTGGATGCTACTTGTGCTGCGCTTCTTCATCGAATTCAGAC
TCATACCAAACCACCAGCTTGAGCTACTTGCTACATTTCTGGGCGTCGAT
GAGACC
FMO06227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45093-RB | 4996 | CG45093-RB | 805..1929 | 9..1103 | 4730 | 96.2 | Plus |
| CG30497-RB | 4996 | CG30497-RB | 805..1929 | 9..1103 | 4730 | 96.2 | Plus |
| CG45093-RD | 5320 | CG45093-RD | 417..1504 | 46..1103 | 4545 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7741027..7741922 | 939..46 | 4305 | 99.2 | Minus |
| 2R | 25286936 | 2R | 7758035..7758073 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:45 has no hits.
FMO06227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:37 Download gff for
FMO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30497-RB | 798..1731 | 1..933 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:54 Download gff for
FMO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30497-RB | 637..1570 | 1..933 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:58 Download gff for
FMO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30497-RB | 798..1731 | 1..933 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:58 Download gff for
FMO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7741033..7741920 | 48..933 | 99 | <- | Minus |
| 2R | 7758035..7758080 | 1..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:37 Download gff for
FMO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3628538..3629425 | 48..933 | 99 | <- | Minus |
| arm_2R | 3645540..3645585 | 1..47 | 91 | | Minus |
