Clone FMO06228 Report

Search the DGRC for FMO06228

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:62
Well:28
Vector:pMK33-CFH-BD
Associated Gene/TranscriptMvl-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06228.5prime Sequence

1153 bp (1007 high quality bases) assembled on 2008-09-15

> FMO06228.5prime
CAGTCGACATGTCTTCGAATGAGGCCTACCACGAGCCGGGTGCCGGTGGA
GATGGACCGGGCGGATCGTCTGGCGCATCCGGCGGAGGAAGTCAGCGGAG
CAACCAGCTGCACCACCAGCAGATACTCAACGAGACGACCTACCTGAAAC
CCGCCGCCAAGCAGGCCTACTTTAGCGACGAGAAGGTCCTCATACCCGAC
GATGATAGCACAAACGTGGGTTTCAGCTTTCGCAAGCTGTGGGCCTTCAC
GGGACCCGGTTTTCTTATGTCCATTGCGTATCTGGACCCCGGCAACATCG
AATCCGATATGCAGTCTGGTGCGGCGGCCAAGTACAAGATCTTGTGGGTC
TTGCTGTGGGCCACAGTCCTAGGTCTGCTCATGCAACGCTTGGCTGCAAG
ACTGGGCGTGGTTACAGGCCTGCATCTGGCCGAGATGTGCTACAGACAGT
ACAAGCGTCTGCCACGTTGGATACTGTGGATAATGATAGAGATAGCCATT
ATTGGATCCGACATGCAGGAGGTCATTGGCACGGCCATTGCCATATACCT
GCTGTCCAACAAAGTAGTGCCTTTGTGGGGCGGAGTGTTGATCACCATTG
TTGACACGTTCACGTTCCTGTTTCTGGACAAGTACGGTCTACGCAAGCTG
GAGTTCCTATTCGGCACCCTCATCACCATTATGGCTGTCTCATTCGGCTA
TGAGTACATTGTATCAGCCCCTAATCAAGGAGAAGTTCTCGAGGGAATGT
TTGTGCCCTGGTGCTCTAACTGCAATTCGAATGTGTTGCTGCAGCCGTGG
GTGTCGTGGGTGCTGTTTATTATGCCGCACAATCTCTACCTGCATTCCGC
CTTGGTTAAGTCCCGCGATAATAGACCGTCGCCAGAAAAAGAAAGTTAGT
GAGGCGAATTTTTACTTCTTCATCGAAGCGTCGGTAGCCTTGTTTGTGTC
CTCATCATTAACCTGTTTGTGGTGCTGTGTTGCCATGGCATGTATGGCAA
AACTAATATGATGTGGTGGAGTGTGTAAAGACCAGTCGAGGTACGAGATG
CAAATGTCTTTGTGGACATGTAAATGGACCCGATCATCGATGCCGATCTA
ACAGGGCGGACTTTCCTGGCTGCCATTGGAGCGTGTCGCCATGTACCATT
GGG

FMO06228.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mvl-RF 2503 CG3671-RF 372..1535 7..1153 5150 97.3 Plus
Mvl-RE 2790 CG3671-RE 372..1535 7..1153 5150 97.3 Plus
Mvl-RG 2221 CG3671-RG 70..1232 8..1153 5145 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21058259..21058468 217..8 1050 100 Minus
3R 32079331 3R 21058016..21058200 400..216 925 100 Minus
3R 32079331 3R 21057787..21057953 565..399 835 100 Minus
3R 32079331 3R 21057576..21057714 704..566 695 100 Minus
3R 32079331 3R 21056695..21056852 860..703 695 98.7 Minus
3R 32079331 3R 21056476..21056628 1008..859 510 94.8 Minus
Blast to na_te.dros performed on 2014-11-28 19:21:56 has no hits.

FMO06228.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:43 Download gff for FMO06228.5prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-RE 364..1534 1..1153 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:42 Download gff for FMO06228.5prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-RC 364..1534 1..1153 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:04 Download gff for FMO06228.5prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-RE 364..1534 1..1153 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:04 Download gff for FMO06228.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21057576..21057714 566..704 100 <- Minus
3R 21057787..21057951 401..565 100 <- Minus
3R 21058016..21058200 216..400 100 <- Minus
3R 21058261..21058471 1..215 98   Minus
3R 21056468..21056626 861..1015 95 <- Minus
3R 21056695..21056850 705..860 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:43 Download gff for FMO06228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16883298..16883436 566..704 100 <- Minus
arm_3R 16883509..16883673 401..565 100 <- Minus
arm_3R 16883738..16883922 216..400 100 <- Minus
arm_3R 16883983..16884193 1..215 98   Minus
arm_3R 16882190..16882348 861..1015 95 <- Minus
arm_3R 16882417..16882572 705..860 98 <- Minus