FMO06228.5prime Sequence
1153 bp (1007 high quality bases) assembled on 2008-09-15
> FMO06228.5prime
CAGTCGACATGTCTTCGAATGAGGCCTACCACGAGCCGGGTGCCGGTGGA
GATGGACCGGGCGGATCGTCTGGCGCATCCGGCGGAGGAAGTCAGCGGAG
CAACCAGCTGCACCACCAGCAGATACTCAACGAGACGACCTACCTGAAAC
CCGCCGCCAAGCAGGCCTACTTTAGCGACGAGAAGGTCCTCATACCCGAC
GATGATAGCACAAACGTGGGTTTCAGCTTTCGCAAGCTGTGGGCCTTCAC
GGGACCCGGTTTTCTTATGTCCATTGCGTATCTGGACCCCGGCAACATCG
AATCCGATATGCAGTCTGGTGCGGCGGCCAAGTACAAGATCTTGTGGGTC
TTGCTGTGGGCCACAGTCCTAGGTCTGCTCATGCAACGCTTGGCTGCAAG
ACTGGGCGTGGTTACAGGCCTGCATCTGGCCGAGATGTGCTACAGACAGT
ACAAGCGTCTGCCACGTTGGATACTGTGGATAATGATAGAGATAGCCATT
ATTGGATCCGACATGCAGGAGGTCATTGGCACGGCCATTGCCATATACCT
GCTGTCCAACAAAGTAGTGCCTTTGTGGGGCGGAGTGTTGATCACCATTG
TTGACACGTTCACGTTCCTGTTTCTGGACAAGTACGGTCTACGCAAGCTG
GAGTTCCTATTCGGCACCCTCATCACCATTATGGCTGTCTCATTCGGCTA
TGAGTACATTGTATCAGCCCCTAATCAAGGAGAAGTTCTCGAGGGAATGT
TTGTGCCCTGGTGCTCTAACTGCAATTCGAATGTGTTGCTGCAGCCGTGG
GTGTCGTGGGTGCTGTTTATTATGCCGCACAATCTCTACCTGCATTCCGC
CTTGGTTAAGTCCCGCGATAATAGACCGTCGCCAGAAAAAGAAAGTTAGT
GAGGCGAATTTTTACTTCTTCATCGAAGCGTCGGTAGCCTTGTTTGTGTC
CTCATCATTAACCTGTTTGTGGTGCTGTGTTGCCATGGCATGTATGGCAA
AACTAATATGATGTGGTGGAGTGTGTAAAGACCAGTCGAGGTACGAGATG
CAAATGTCTTTGTGGACATGTAAATGGACCCGATCATCGATGCCGATCTA
ACAGGGCGGACTTTCCTGGCTGCCATTGGAGCGTGTCGCCATGTACCATT
GGG
FMO06228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mvl-RF | 2503 | CG3671-RF | 372..1535 | 7..1153 | 5150 | 97.3 | Plus |
Mvl-RE | 2790 | CG3671-RE | 372..1535 | 7..1153 | 5150 | 97.3 | Plus |
Mvl-RG | 2221 | CG3671-RG | 70..1232 | 8..1153 | 5145 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21058259..21058468 | 217..8 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 21058016..21058200 | 400..216 | 925 | 100 | Minus |
3R | 32079331 | 3R | 21057787..21057953 | 565..399 | 835 | 100 | Minus |
3R | 32079331 | 3R | 21057576..21057714 | 704..566 | 695 | 100 | Minus |
3R | 32079331 | 3R | 21056695..21056852 | 860..703 | 695 | 98.7 | Minus |
3R | 32079331 | 3R | 21056476..21056628 | 1008..859 | 510 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:56 has no hits.
FMO06228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:43 Download gff for
FMO06228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mvl-RE | 364..1534 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:42 Download gff for
FMO06228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mvl-RC | 364..1534 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:04 Download gff for
FMO06228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mvl-RE | 364..1534 | 1..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:04 Download gff for
FMO06228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21057576..21057714 | 566..704 | 100 | <- | Minus |
3R | 21057787..21057951 | 401..565 | 100 | <- | Minus |
3R | 21058016..21058200 | 216..400 | 100 | <- | Minus |
3R | 21058261..21058471 | 1..215 | 98 | | Minus |
3R | 21056468..21056626 | 861..1015 | 95 | <- | Minus |
3R | 21056695..21056850 | 705..860 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:43 Download gff for
FMO06228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16883298..16883436 | 566..704 | 100 | <- | Minus |
arm_3R | 16883509..16883673 | 401..565 | 100 | <- | Minus |
arm_3R | 16883738..16883922 | 216..400 | 100 | <- | Minus |
arm_3R | 16883983..16884193 | 1..215 | 98 | | Minus |
arm_3R | 16882190..16882348 | 861..1015 | 95 | <- | Minus |
arm_3R | 16882417..16882572 | 705..860 | 98 | <- | Minus |