FMO06230.5prime Sequence
1139 bp (1025 high quality bases) assembled on 2008-09-15
> FMO06230.5prime
CAGTCGACATGCGTAAGAAGCAGGCGGATGAAATACCAGGCTTTCCATCA
CTGGACAACGATGCCGGCACCAGCGACCGGGGCGCCGACATTCTCAAGTC
CAAGTCCAAGAAGAACAAGAGTGGTGGATTCCAGTCGATGGGCCTGGGCT
TCGAGCTGATAAAGGGCATCACCAAGCGGGGTTACAAGGTTCCCACCCCC
ATACAGCGGAAAACGATTCCGCTGATCCTGGAGGGACGCGATGTGGTGGC
AATGGCCAAGACGGGCTCTGGCAAGACGGCCTGCTTTCTGATTCCGCTCT
TTGAAAAGCTACAGAGGCGCGAGCCCACAAAGGGGGCCCGTGCCCTGATC
CTGTCTCCGACGCGCGAACTGGCTGTGCAGACGTATAAGTTCATAAAGGA
GCTGGGCCGCTTTATGGAACTGAAGAGCATTCTGGTGCTAGGTGGCGACT
CCATGGACTCACAGTTCTCGGCCATACATACCTGTCCGGACGTAATTGTT
GCAACGCCAGGTCGTTTTCTTCATTTGTGCGTAGAAATGGACTTGAAGCT
AAATTCCATAGAGTACGTGGTGTTTGATGAAGCCGATCGACTCTTCGAGA
TGGGCTTCGGCGAGCAACTGAACGAAACGTTGCACAGATTGCCATCGTCC
CGGCAGACGGTCATGTTTTCAGCCACGCTGCCAAAACTGCTAGTAGAGTT
CGCCCGTGCCGGACTGAACGACCCAGTGCTCATTCGTTTAGACGTCGAAT
CCAAGCTCCCGGATGCGCTGGCTCTAAAGTTTCTGTACTGTCGACCAGAC
GACCGCTACACAGCACTTGTGGTTCTTCTTAAGTACGTTATTCCGGTGCA
GTCGCAAACCGTGGTGTTCGCCGGTACTCAGCACCATGTCGAACTCATTT
CGTACATACTTACTGAGGCTGGAATCTCCAACGCCTCAGTCTACTCCAGC
CTGGATCCAGCTGCACGCAAATAACACGGCCAAATTTGTGAACAAAAGTG
GTCGTGCTATAGTCACGGACGTGCCGCGCGTTGTATGACATTCCCAGTCT
TGACTTTGTGTGACCTGCACTCCCGGGTAACCGAACTGTTTGTTCCACCG
GTTAGTCGTTGCGCCTTCGCTGGTCGACAGACGATACTT
FMO06230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 66..1195 | 9..1126 | 5180 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 324049..324599 | 561..11 | 2755 | 100 | Minus |
| 3L | 28110227 | 3L | 323489..323997 | 1060..559 | 2175 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:02 has no hits.
FMO06230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:47 Download gff for
FMO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..1173 | 9..1105 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:52 Download gff for
FMO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 63..1170 | 9..1105 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:27 Download gff for
FMO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..1173 | 9..1105 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:27 Download gff for
FMO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 323413..323994 | 562..1130 | 95 | <- | Minus |
| 3L | 324049..324607 | 1..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:47 Download gff for
FMO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 323413..323994 | 562..1130 | 95 | <- | Minus |
| arm_3L | 324049..324607 | 1..561 | 99 | | Minus |
