FMO06231.5prime Sequence
1152 bp (1017 high quality bases) assembled on 2008-09-15
> FMO06231.5prime
CAGTCGACATGGTGGCCCAGGAGCAGCTCGTCCTGCTGCTCATGCTGCTT
GCCGGCTGCCGGGGTGGCGCCAACGCCATCTTGGATCCTGGCTGGGTGAT
TCCCTCCAAGGTGGAGCAGCTCATCGGCGGCGACTTTAATCTGAGCTGCA
CCCTCAACGAAGACTACTTTAACGGCAAGAGCGCCGAGGACTGCCCGGTG
GAGAAGCTGTACTTTACAGGCGGCGGCCGCGTCTACCGCGATTCCAAGCA
CATCCGAATCCTGAACAACACCACCATCCTGTTTAGCGACACGAATGCCG
TGGAGCAAGAGAACGACTACCACTGCATGTGCGACGAGTATGTGATCAAC
AAGTCAAAGGTCTACGTGGGCACCAGGCCGCTCCTGGTGCGCGACTTCAA
CTGCCTGGACTACGACTTCCAGTTTATGGTGTGCAACTTCACCCAGCCGC
CCAACACGGTCATCACCAAGTACAACATCAGCTACAACACCAACAACGAC
TGGCGATATAGCAACACACTGGACTGCAACTTCGACTCGGCGCCAGTGGT
CACCTGTAACCTAACCGACGACAACTACAAGCGCTTCAGCGAGACCTTCT
ACTTCCGACTGTCCATCTCCAATGCCCTGGGCCACGAGACGCAGCCGATC
ACGATCAATCACTTTGAGCGTCTGGTGCCGGCGCGACCTGGCCAGAACCT
GACCCTGCTCAACAGGACCGAGAGCTCCGTGTGCCTGTCGTGGGAGATGC
CCCGTCGGTCTAACTACAATCGCGGCCTGGTGTGGCAGGTGCGCGTCACG
CCGCAAAACTTTGAGCCCATCACGCGGCCCAGCTGGGCGAAACCACACGC
TGACCATCAGGGACACGCTCTGCCTCACGGAGCTGCCCTTCGCCGGCTAC
AACTACACGCTCCGGGTGCGCGTGCGCGCCAACAAAAACAACACGCTCTG
GAAGCGAGCCATGATTTATGCGTTCGCCACCGCTCGCGCGGCGCGCCGCC
CTCCTCGCGTCACTACGGCAGCTTCTATTTCTACTCGTGGAAAGCTATGG
CGCTCTACTGGGGAGCCCTGGAGGAACCCGAACTGACGGACCGAACTTCG
GTATCTCCATCAGCGAGTACCGATCAACGGAAAGCATGGTTCTTGACCTA
CT
FMO06231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dome-RA | 4875 | CG14226-RA | 549..1680 | 9..1132 | 5110 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19681839..19682970 | 1132..9 | 4840 | 96.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2427..2515 | 452..537 | 131 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2465..2625 | 433..596 | 128 | 58.3 | Plus |
| Porto1 | 4682 | Porto1 DOC5 4682bp | 425..468 | 476..519 | 112 | 72.7 | Plus |
FMO06231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:58 Download gff for
FMO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dome-RA | 542..1695 | 1..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:45 Download gff for
FMO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dome-RA | 540..1693 | 1..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:59 Download gff for
FMO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dome-RA | 542..1695 | 1..1145 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:59 Download gff for
FMO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19681834..19682977 | 1..1136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:58 Download gff for
FMO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19575867..19577010 | 1..1136 | 97 | | Minus |
